Strain identifier
BacDive ID: 8617
Type strain: 
Species: Mycoplasmopsis pulmonis
Strain Designation: Ash, L3, PG34
Strain history: <- CIP <- NCTC <- D. G. ff. Edward; PG34 <- E. A. Freundt; Ash <- E. Klieneberger; L3
NCBI tax ID(s): 2107 (species)
version 8.1 (current version)
General
@ref: 16120
BacDive-ID: 8617
DSM-Number: 22144
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Mycoplasmopsis pulmonis Ash is a mesophilic animal pathogen that was isolated from rat, lung lesion.
NCBI tax id
- NCBI tax id: 2107
- Matching level: species
strain history
- @ref: 16120
- history: <- CIP <- NCTC <- D. G. ff. Edward; PG34 <- E. A. Freundt; Ash <- E. Klieneberger; L3
doi: 10.13145/bacdive8617.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis pulmonis
- full scientific name: Mycoplasmopsis pulmonis (Sabin 1941) Gupta et al. 2018
synonyms
@ref synonym 20215 Mycoplasma pulmonis 20215 Murimyces pulmonis
@ref: 16120
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Mycoplasmopsis
species: Mycoplasmopsis pulmonis
full scientific name: Mycoplasmopsis pulmonis (Sabin 1941) Gupta et al. 2018
strain designation: Ash, L3, PG34
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.267 | |
| 69480 | 91.521 | positive |
colony morphology
- @ref: 16120
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 16120
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 16120
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
- @ref: 16120
- sample type: rat, lung lesion
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Other | #Wound |
| #Host Body-Site | #Oral cavity and airways | #Lung |
taxonmaps
- @ref: 69479
- File name: preview.99_3873.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16310;96_1987;97_2388;98_2950;99_3873&stattab=map
- Last taxonomy: Mycoplasma pulmonis subclade
- 16S sequence: AF125582
- Sequence Identity:
- Total samples: 761
- soil counts: 68
- aquatic counts: 94
- animal counts: 554
- plant counts: 45
Safety information
risk assessment
- @ref: 16120
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16120
- description: Mycoplasma pulmonis strain PG34(T) 16S ribosomal RNA gene, partial sequence
- accession: AF125582
- length: 1468
- database: ena
- NCBI tax ID: 2107
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasmopsis pulmonis NCTC10139 | GCA_900660575 | complete | ncbi | 2107 |
| 66792 | Mycoplasma pulmonis strain NCTC10139 | 2107.4 | complete | patric | 2107 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.644 | no |
| gram-positive | yes | 65.476 | no |
| anaerobic | no | 96.72 | no |
| aerobic | no | 93.69 | no |
| halophile | no | 55.329 | no |
| spore-forming | no | 98.409 | no |
| thermophile | no | 96.185 | no |
| glucose-util | yes | 91.494 | no |
| motile | no | 93.026 | no |
| glucose-ferment | yes | 78.655 | no |
External links
@ref: 16120
culture collection no.: DSM 22144, ATCC 19612, CIP 75.26, IFO (now NBRC) 14896, NCTC 10139
straininfo link
- @ref: 77998
- straininfo: 37033
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16120 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22144) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22144 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 77998 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37033.1 | StrainInfo: A central database for resolving microbial strain identifiers |