Strain identifier
BacDive ID: 8615
Type strain: 
Species: Mycoplasmoides pneumoniae
Strain Designation: FH
Strain history: <- R. Herrmann, ZMBH, Univ. of Heidelberg, Germany; FH <- ATCC <- L. Hayflick <- C. Liu; Eaton Agent
NCBI tax ID(s): 2104 (species)
version 8.1 (current version)
General
@ref: 17469
BacDive-ID: 8615
DSM-Number: 23978
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Mycoplasmoides pneumoniae FH is an aerobe, mesophilic, Gram-negative bacterium that was isolated from monkey kidney tissue-culture fluids of the FH strain supplied by C. Liu, who recovered this strain in embryonated eggs from a student with atypical pneumonia..
NCBI tax id
- NCBI tax id: 2104
- Matching level: species
strain history
- @ref: 17469
- history: <- R. Herrmann, ZMBH, Univ. of Heidelberg, Germany; FH <- ATCC <- L. Hayflick <- C. Liu; Eaton Agent
doi: 10.13145/bacdive8615.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Mycoplasmoidaceae
- genus: Mycoplasmoides
- species: Mycoplasmoides pneumoniae
- full scientific name: Mycoplasmoides pneumoniae (Somerson et al. 1963) Gupta et al. 2018
synonyms
@ref synonym 20215 Schizoplasma pneumoniae 20215 Mycoplasma pneumoniae
@ref: 17469
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmoidaceae
genus: Mycoplasmoides
species: Mycoplasmoides pneumoniae
full scientific name: Mycoplasmoides pneumoniae (Somerson et al. 1963) Gupta et al. 2018
strain designation: FH
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 93.312
colony morphology
- @ref: 17469
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 17469
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 17469
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 17469
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 17469
- sample type: monkey kidney tissue-culture fluids of the FH strain (Eaton Agent Virus) supplied by C. Liu, who recovered this strain in embryonated eggs from a student with atypical pneumonia.
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Host | #Mammals | #Primates |
| #Host | #Microbial | #Viriome |
| #Host Body-Site | #Urogenital tract | #Kidney |
taxonmaps
- @ref: 69479
- File name: preview.99_465.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16526;96_307;97_341;98_385;99_465&stattab=map
- Last taxonomy: Mycoplasma pneumoniae
- 16S sequence: AF132740
- Sequence Identity:
- Total samples: 1315
- soil counts: 32
- aquatic counts: 113
- animal counts: 1165
- plant counts: 5
Safety information
risk assessment
- @ref: 17469
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycoplasma pneumoniae gene for 16S rRNA, partial sequence | AB069819 | 251 | ena | 2104 |
| 20218 | Mycoplasma pneumoniae strain ATCC 15531 16S ribosomal RNA gene and 16S-23S rRNA intergenic spacer, complete sequence | AF132740 | 1740 | ena | 722438 |
| 20218 | Mycoplasma pneumoniae strain ATCC 15531 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AY816339 | 862 | ena | 722438 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasmoides pneumoniae NCTC10119 | GCA_900660465 | complete | ncbi | 2104 |
| 66792 | Mycoplasma pneumoniae FH | 722438.5 | complete | patric | 722438 |
| 66792 | Mycoplasma pneumoniae strain NCTC10119 | 2104.332 | complete | patric | 2104 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.395 | no |
| gram-positive | no | 54.744 | no |
| anaerobic | no | 96.853 | no |
| aerobic | no | 91.77 | yes |
| halophile | no | 55.418 | no |
| spore-forming | no | 98.553 | no |
| thermophile | no | 90.498 | no |
| glucose-util | yes | 90.147 | no |
| motile | no | 91.979 | no |
| glucose-ferment | yes | 80.805 | no |
External links
@ref: 17469
culture collection no.: DSM 23978, ATCC 15531, Eaton Agent, NCTC 10119, CIP 103766, NBRC 14401
straininfo link
- @ref: 77997
- straininfo: 311028
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 7018323 | [Adult respiratory distress syndrome. Two post-operative cases (author's transl)]. | Freysz M, Decornet AM, Chalopin JM, Bourdois M, Pothier P, Caillard B | Anesth Analg (Paris) | 1981 | Adult, Coronary Artery Bypass, Humans, Kidney Transplantation, Male, Middle Aged, Pneumonia, Mycoplasma/*complications/diagnosis, Postoperative Complications, Postoperative Period, Respiratory Distress Syndrome/*etiology/therapy, Time Factors | Stress | |
| 35220163 | Design, synthesis and antibacterial evaluation of pleuromutilin derivatives. | Wu G, Zhu Z, Li J, Luo X, Zhu W, Liao G, Xia J, Zhang W, Pan W, Li T, Wu S | Bioorg Med Chem | 2022 | Anti-Bacterial Agents/pharmacology, Diterpenes, *Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, Polycyclic Compounds, *Staphylococcus aureus, Urea | 10.1016/j.bmc.2022.116676 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17469 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23978) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23978 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77997 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID311028.1 | StrainInfo: A central database for resolving microbial strain identifiers |