Strain identifier
BacDive ID: 8609
Type strain: 
Species: Mesomycoplasma hyorhinis
Strain Designation: PG42
Strain history: <- NBRC <- National Institute of Animal Health, Japan
NCBI tax ID(s): 634996 (strain), 2100 (species)
version 8.1 (current version)
General
@ref: 18056
BacDive-ID: 8609
DSM-Number: 25591
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Mesomycoplasma hyorhinis PG42 is a mesophilic, Gram-negative animal pathogen that was isolated from nasal cavity of pig.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 634996 | strain |
| 2100 | species |
strain history
- @ref: 18056
- history: <- NBRC <- National Institute of Animal Health, Japan
doi: 10.13145/bacdive8609.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mesomycoplasma
- species: Mesomycoplasma hyorhinis
- full scientific name: Mesomycoplasma hyorhinis (Switzer 1955) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma hyorhinis
@ref: 18056
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Mesomycoplasma
species: Mesomycoplasma hyorhinis
full scientific name: Mesomycoplasma hyorhinis (Switzer 1955) Gupta et al. 2018
strain designation: PG42
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.163
colony morphology
- @ref: 18056
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 18056
- name: FRIIS MEDIUM (DSMZ Medium 1078)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1078
- composition: Name: FRIIS MEDIUM (DSMZ Medium 1078) Composition: PPLO broth 5.40373 g/l Bacto brain heart infusion 5.09317 g/l NaCl 2.48447 g/l Yeast extract 0.83 g/l KCl 0.124224 g/l CaCl2 0.0574534 g/l Na2HPO4 x 2 H2O 0.0465838 g/l MgCl2 x 6 H2O 0.0310559 g/l MgSO4 x 7 H2O 0.0310559 g/l KH2PO4 0.0186335 g/l Phenol red 0.00133 g/l Porcine serum Distilled water
culture temp
- @ref: 18056
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
Isolation, sampling and environmental information
isolation
- @ref: 18056
- sample type: nasal cavity of pig
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body-Site | #Organ | #Nose |
taxonmaps
- @ref: 69479
- File name: preview.99_1407.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15820;96_814;97_948;98_1113;99_1407&stattab=map
- Last taxonomy: Mycoplasma hyorhinis
- 16S sequence: GU227372
- Sequence Identity:
- Total samples: 2311
- soil counts: 366
- aquatic counts: 295
- animal counts: 1620
- plant counts: 30
Safety information
risk assessment
- @ref: 18056
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycoplasma hyorhinis 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF294993 | 797 | ena | 634996 |
| 20218 | Mycoplasma hyorhinis ATCC 17981 16S ribosomal RNA gene, partial sequence | GU227372 | 1432 | ena | 634996 |
| 20218 | M.hyorhinis, 16S ribosomal RNA small subunit | M24658 | 1470 | ena | 2100 |
| 18056 | Mycoplasma hyorhinis strain BTS-7 16S ribosomal RNA gene, partial sequence | AF412982 | 1468 | ena | 2100 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mesomycoplasma hyorhinis ATCC 17981 BTS7 | GCA_000383515 | scaffold | ncbi | 634996 |
| 66792 | Mesomycoplasma hyorhinis NCTC10130 | GCA_900476065 | complete | ncbi | 2100 |
| 66792 | Mycoplasma hyorhinis ATCC 17981 | 634996.3 | wgs | patric | 634996 |
| 66792 | Mycoplasma hyorhinis strain IMT49388 | 2100.47 | complete | patric | 2100 |
| 66792 | Mycoplasma hyorhinis strain NCTC10130 | 2100.29 | complete | patric | 2100 |
| 66792 | Mycoplasma hyorhinis BTS7, ATCC 17981 | 2519899697 | draft | img | 634996 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.296 | no |
| gram-positive | yes | 50.811 | no |
| anaerobic | no | 96.816 | no |
| aerobic | no | 91.934 | no |
| halophile | yes | 51.51 | no |
| spore-forming | no | 98.627 | no |
| thermophile | no | 94.471 | yes |
| glucose-util | yes | 90.476 | no |
| motile | no | 92.67 | no |
| glucose-ferment | yes | 79.79 | no |
External links
@ref: 18056
culture collection no.: DSM 25591, ATCC 17981, CIP 104968, IFO (now NBRC) 14858, NCTC 10130
straininfo link
- @ref: 77992
- straininfo: 36795
literature
- topic: Genetics
- Pubmed-ID: 33888501
- title: Whole-Genome Sequence of the Mycoplasma (Mesomycoplasma) hyorhinis DSM 25591 Type Strain.
- authors: Kabisch L, Schink AK, Hanke D, Semmler T, Kehrenberg C, Schwarz S
- journal: Microbiol Resour Announc
- DOI: 10.1128/MRA.00164-21
- year: 2021
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18056 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25591) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25591 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77992 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36795.1 | StrainInfo: A central database for resolving microbial strain identifiers |