Strain identifier

BacDive ID: 8603

Type strain: Yes

Species: Mycoplasmopsis gallinarum

Strain Designation: PG 16

Strain history: <- J. Davis <- D. G. ff. Edward; PG 16 <- H. Chu

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General

@ref: 8333

BacDive-ID: 8603

DSM-Number: 19816

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Mycoplasmopsis gallinarum PG 16 is a mesophilic, Gram-negative animal pathogen that was isolated from respiratory tract of fowl with coryza.

NCBI tax id

NCBI tax idMatching level
29557species
1122248strain

strain history

  • @ref: 8333
  • history: <- J. Davis <- D. G. ff. Edward; PG 16 <- H. Chu

doi: 10.13145/bacdive8603.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Mycoplasmopsis
  • species: Mycoplasmopsis gallinarum
  • full scientific name: Mycoplasmopsis gallinarum (Freundt 1955) Gupta et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Mycoplasma gallinarum

@ref: 8333

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Mycoplasmopsis

species: Mycoplasmopsis gallinarum

full scientific name: Mycoplasmopsis gallinarum (Freundt 1955) Gupta et al. 2018

strain designation: PG 16

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 92.858

Culture and growth conditions

culture medium

  • @ref: 8333
  • name: SP4-Z MEDIUM (DSMZ Medium 1076b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1076b
  • composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water

culture temp

  • @ref: 8333
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.997

Isolation, sampling and environmental information

isolation

  • @ref: 8333
  • sample type: respiratory tract of fowl with coryza
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Birds
#Host Body-Site#Oral cavity and airways#Airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_4621.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_182;96_2300;97_2793;98_3470;99_4621&stattab=map
  • Last taxonomy: Mycoplasma gallinarum subclade
  • 16S sequence: L24105
  • Sequence Identity:
  • Total samples: 88
  • soil counts: 1
  • aquatic counts: 3
  • animal counts: 84

Safety information

risk assessment

  • @ref: 8333
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8333
  • description: Mycoplasma gallinarum 16S ribosomal RNA (16SrRNA) gene
  • accession: L24105
  • length: 1435
  • database: ena
  • NCBI tax ID: 29557

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycoplasmopsis gallinarum DSM 19816GCA_000621085scaffoldncbi1122248
66792Mycoplasma gallinarum DSM 198161122248.3wgspatric1122248
66792Mycoplasma gallinarum DSM 198162558860163draftimg1122248

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.245no
flagellatedno97.864no
gram-positiveyes57.81no
anaerobicno97.437no
halophileno50no
spore-formingno98.499no
thermophileno98.422no
glucose-utilyes85.55no
aerobicno93.394no
glucose-fermentyes71.444no

External links

@ref: 8333

culture collection no.: DSM 19816, ATCC 19708, IFO 14859, NCTC 10120

straininfo link

  • @ref: 77986
  • straininfo: 37080

literature

  • Pubmed-ID: 18680067
  • title: Genotypic heterogeneity among strains of Mycoplasma gallinarum.
  • authors: Dovc P, Bencina D, Zajc I
  • journal: Avian Pathol
  • DOI: 10.1080/03079459108418809
  • year: 1991

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8333Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19816)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19816
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77986Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37080.1StrainInfo: A central database for resolving microbial strain identifiers