Strain identifier
BacDive ID: 8603
Type strain:
Species: Mycoplasmopsis gallinarum
Strain Designation: PG 16
Strain history: <- J. Davis <- D. G. ff. Edward; PG 16 <- H. Chu
NCBI tax ID(s): 1122248 (strain), 29557 (species)
General
@ref: 8333
BacDive-ID: 8603
DSM-Number: 19816
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Mycoplasmopsis gallinarum PG 16 is a mesophilic, Gram-negative animal pathogen that was isolated from respiratory tract of fowl with coryza.
NCBI tax id
NCBI tax id | Matching level |
---|---|
29557 | species |
1122248 | strain |
strain history
- @ref: 8333
- history: <- J. Davis <- D. G. ff. Edward; PG 16 <- H. Chu
doi: 10.13145/bacdive8603.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis gallinarum
- full scientific name: Mycoplasmopsis gallinarum (Freundt 1955) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma gallinarum
@ref: 8333
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Mycoplasmopsis
species: Mycoplasmopsis gallinarum
full scientific name: Mycoplasmopsis gallinarum (Freundt 1955) Gupta et al. 2018
strain designation: PG 16
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 92.858
Culture and growth conditions
culture medium
- @ref: 8333
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 8333
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 8333
- sample type: respiratory tract of fowl with coryza
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Inflammation | |
#Host | #Birds | |
#Host Body-Site | #Oral cavity and airways | #Airways |
taxonmaps
- @ref: 69479
- File name: preview.99_4621.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_182;96_2300;97_2793;98_3470;99_4621&stattab=map
- Last taxonomy: Mycoplasma gallinarum subclade
- 16S sequence: L24105
- Sequence Identity:
- Total samples: 88
- soil counts: 1
- aquatic counts: 3
- animal counts: 84
Safety information
risk assessment
- @ref: 8333
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8333
- description: Mycoplasma gallinarum 16S ribosomal RNA (16SrRNA) gene
- accession: L24105
- length: 1435
- database: ena
- NCBI tax ID: 29557
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycoplasmopsis gallinarum DSM 19816 | GCA_000621085 | scaffold | ncbi | 1122248 |
66792 | Mycoplasma gallinarum DSM 19816 | 1122248.3 | wgs | patric | 1122248 |
66792 | Mycoplasma gallinarum DSM 19816 | 2558860163 | draft | img | 1122248 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 94.245 | no |
flagellated | no | 97.864 | no |
gram-positive | yes | 57.81 | no |
anaerobic | no | 97.437 | no |
halophile | no | 50 | no |
spore-forming | no | 98.499 | no |
thermophile | no | 98.422 | no |
glucose-util | yes | 85.55 | no |
aerobic | no | 93.394 | no |
glucose-ferment | yes | 71.444 | no |
External links
@ref: 8333
culture collection no.: DSM 19816, ATCC 19708, IFO 14859, NCTC 10120
straininfo link
- @ref: 77986
- straininfo: 37080
literature
- Pubmed-ID: 18680067
- title: Genotypic heterogeneity among strains of Mycoplasma gallinarum.
- authors: Dovc P, Bencina D, Zajc I
- journal: Avian Pathol
- DOI: 10.1080/03079459108418809
- year: 1991
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8333 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19816) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19816 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77986 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37080.1 | StrainInfo: A central database for resolving microbial strain identifiers |