Strain identifier

BacDive ID: 8599

Type strain: Yes

Species: Mycoplasmopsis californica

Strain Designation: ST-6

Strain history: <- J. K. Davis; ST-6 {2008} <- J. G. Tully <- D. E. Jasper, California {1982}

NCBI tax ID(s): 2113 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15728

BacDive-ID: 8599

DSM-Number: 21477

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Mycoplasmopsis californica ST-6 is a mesophilic animal pathogen that was isolated from bovine milk .

NCBI tax id

  • NCBI tax id: 2113
  • Matching level: species

strain history

  • @ref: 15728
  • history: <- J. K. Davis; ST-6 {2008} <- J. G. Tully <- D. E. Jasper, California {1982}

doi: 10.13145/bacdive8599.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Mycoplasmopsis
  • species: Mycoplasmopsis californica
  • full scientific name: Mycoplasmopsis californica (Jasper et al. 1981) Gupta et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Mycoplasma californicum

@ref: 15728

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Mycoplasmopsis

species: Mycoplasmopsis californica

full scientific name: Mycoplasmopsis californica (Jasper et al. 1981) Gupta et al. 2018

strain designation: ST-6

type strain: yes

Morphology

colony morphology

  • @ref: 15728
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 15728
  • name: SP4-Z MEDIUM (DSMZ Medium 1076b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1076b
  • composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water

culture temp

  • @ref: 15728
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 15728
  • sample type: bovine milk (mastitis)
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Milk

Safety information

risk assessment

  • @ref: 15728
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycoplasma californicum strain ATCC 33461 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY736031936ena2113
15728M.californicum 16S ribosomal RNA small subunitM245821490ena2113

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycoplasmopsis californica ST-6GCA_000695835completencbi2113
66792Mycoplasmopsis californica NCTC10189GCA_900660595completencbi2113
66792Mycoplasma californicum strain NCTC101892113.9completepatric2113
66792Mycoplasmopsis californica ST-62576861462completeimg2113

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.85no
flagellatedno97.115no
gram-positiveno50.953no
anaerobicno97.411no
halophileno51.63no
spore-formingno98.398no
glucose-utilyes83.169no
aerobicno92.181no
thermophileno97.825yes
glucose-fermentyes70.529no

External links

@ref: 15728

culture collection no.: DSM 21477, AMRC-C 1077, ATCC 33461, NCTC 10189

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20418418Mycoplasma mucosicanis sp. nov., isolated from the mucosa of dogs.Spergser J, Langer S, Muck S, Macher K, Szostak M, Rosengarten R, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.015750-02010Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer, Dogs, Genitalia/microbiology, Molecular Sequence Data, Molecular Typing, Mouth/microbiology, Mucous Membrane/*microbiology, Mycoplasma/*classification/genetics/*isolation & purification, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SerotypingGenetics
Genetics24994797Complete Genome Sequence of the Bovine Mastitis Pathogen Mycoplasma californicum Strain ST-6T (ATCC 33461T).Calcutt MJ, Foecking MF, Fox LKGenome Announc10.1128/genomeA.00648-142014
Genetics25281385Molecular epidemiology of cases of Mycoplasma californicum infection in Japan.Hata E, Suzuki K, Hanyu H, Itoh M, Higuchi H, Kobayashi HAppl Environ Microbiol10.1128/AEM.02488-142014Animals, Cattle, Cattle Diseases/epidemiology/*microbiology, Female, Genotype, Japan/epidemiology, Minisatellite Repeats, Molecular Epidemiology, Multilocus Sequence Typing/*methods, Mycoplasma/classification/genetics/*isolation & purification, Mycoplasma Infections/*microbiologyPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15728Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21477)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21477
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880