Strain identifier
BacDive ID: 8599
Type strain:
Species: Mycoplasmopsis californica
Strain Designation: ST-6
Strain history: <- J. K. Davis; ST-6 {2008} <- J. G. Tully <- D. E. Jasper, California {1982}
NCBI tax ID(s): 2113 (species)
General
@ref: 15728
BacDive-ID: 8599
DSM-Number: 21477
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Mycoplasmopsis californica ST-6 is a mesophilic animal pathogen that was isolated from bovine milk .
NCBI tax id
- NCBI tax id: 2113
- Matching level: species
strain history
- @ref: 15728
- history: <- J. K. Davis; ST-6 {2008} <- J. G. Tully <- D. E. Jasper, California {1982}
doi: 10.13145/bacdive8599.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis californica
- full scientific name: Mycoplasmopsis californica (Jasper et al. 1981) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma californicum
@ref: 15728
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Mycoplasmopsis
species: Mycoplasmopsis californica
full scientific name: Mycoplasmopsis californica (Jasper et al. 1981) Gupta et al. 2018
strain designation: ST-6
type strain: yes
Morphology
colony morphology
- @ref: 15728
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 15728
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 15728
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 15728
- sample type: bovine milk (mastitis)
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Fluids | #Milk |
Safety information
risk assessment
- @ref: 15728
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycoplasma californicum strain ATCC 33461 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AY736031 | 936 | ena | 2113 |
15728 | M.californicum 16S ribosomal RNA small subunit | M24582 | 1490 | ena | 2113 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycoplasmopsis californica ST-6 | GCA_000695835 | complete | ncbi | 2113 |
66792 | Mycoplasmopsis californica NCTC10189 | GCA_900660595 | complete | ncbi | 2113 |
66792 | Mycoplasma californicum strain NCTC10189 | 2113.9 | complete | patric | 2113 |
66792 | Mycoplasmopsis californica ST-6 | 2576861462 | complete | img | 2113 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.85 | no |
flagellated | no | 97.115 | no |
gram-positive | no | 50.953 | no |
anaerobic | no | 97.411 | no |
halophile | no | 51.63 | no |
spore-forming | no | 98.398 | no |
glucose-util | yes | 83.169 | no |
aerobic | no | 92.181 | no |
thermophile | no | 97.825 | yes |
glucose-ferment | yes | 70.529 | no |
External links
@ref: 15728
culture collection no.: DSM 21477, AMRC-C 1077, ATCC 33461, NCTC 10189
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20418418 | Mycoplasma mucosicanis sp. nov., isolated from the mucosa of dogs. | Spergser J, Langer S, Muck S, Macher K, Szostak M, Rosengarten R, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.015750-0 | 2010 | Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer, Dogs, Genitalia/microbiology, Molecular Sequence Data, Molecular Typing, Mouth/microbiology, Mucous Membrane/*microbiology, Mycoplasma/*classification/genetics/*isolation & purification, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Serotyping | Genetics |
Genetics | 24994797 | Complete Genome Sequence of the Bovine Mastitis Pathogen Mycoplasma californicum Strain ST-6T (ATCC 33461T). | Calcutt MJ, Foecking MF, Fox LK | Genome Announc | 10.1128/genomeA.00648-14 | 2014 | ||
Genetics | 25281385 | Molecular epidemiology of cases of Mycoplasma californicum infection in Japan. | Hata E, Suzuki K, Hanyu H, Itoh M, Higuchi H, Kobayashi H | Appl Environ Microbiol | 10.1128/AEM.02488-14 | 2014 | Animals, Cattle, Cattle Diseases/epidemiology/*microbiology, Female, Genotype, Japan/epidemiology, Minisatellite Repeats, Molecular Epidemiology, Multilocus Sequence Typing/*methods, Mycoplasma/classification/genetics/*isolation & purification, Mycoplasma Infections/*microbiology | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15728 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21477) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21477 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |