Strain identifier

BacDive ID: 8596

Type strain: Yes

Species: Mycoplasmopsis bovirhinis

Strain Designation: 5M 331, 5M331, PG 43, PG43

Strain history: CIP <- 1971, P. Perreau: strain PG43 <- R. Leach: strain 5M 331

NCBI tax ID(s): 29553 (species)

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General

@ref: 15871

BacDive-ID: 8596

DSM-Number: 21657

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Mycoplasmopsis bovirhinis 5M 331 is a mesophilic, Gram-negative animal pathogen that was isolated from bovine respiratory tract.

NCBI tax id

  • NCBI tax id: 29553
  • Matching level: species

strain history

@refhistory
15871<- J. K. Davis {2008} <- J. G. Tully <- R. H. Leach, NCTC; 5M 331
116907CIP <- 1971, P. Perreau: strain PG43 <- R. Leach: strain 5M 331

doi: 10.13145/bacdive8596.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Mycoplasmopsis
  • species: Mycoplasmopsis bovirhinis
  • full scientific name: Mycoplasmopsis bovirhinis (Leach 1967) Gupta et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Mycoplasma bovirhinis

@ref: 15871

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Mycoplasmopsis

species: Mycoplasmopsis bovirhinis

full scientific name: Mycoplasmopsis bovirhinis (Leach 1967) Gupta et al. 2018

strain designation: 5M 331, 5M331, PG 43, PG43

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 97.388

colony morphology

  • @ref: 15871
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15871SP4-Z MEDIUM (DSMZ Medium 1076b)yeshttps://mediadive.dsmz.de/medium/1076bName: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
33479MEDIUM 88 - for Mycoplasma and AcholeplasmayesDistilled water make up to (670.000 ml);PPLO broth (17.000 g);Sterile supplement - M00273 (210.000 ml);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml)
116907CIP Medium 88yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=88

culture temp

@refgrowthtypetemperaturerange
15871positivegrowth37mesophilic
33479positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.997

Isolation, sampling and environmental information

isolation

@refsample type
15871bovine respiratory tract
116907Animal, Bovine, respiratory tract

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Vascular system

taxonmaps

  • @ref: 69479
  • File name: preview.99_24500.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_157;96_1694;97_2028;98_18420;99_24500&stattab=map
  • Last taxonomy: Mycoplasma bovirhinis subclade
  • 16S sequence: U44766
  • Sequence Identity:
  • Total samples: 1453
  • soil counts: 6
  • aquatic counts: 18
  • animal counts: 1427
  • plant counts: 2

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15871yes2Risk group (German classification)
1169071Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycoplasma bovirhinis gene for 16S rRNA, partial sequence, strain: NBRC 14857AB6806871434ena29553
20218Mycoplasma bovirhinis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY729933931ena29553
15871Mycoplasma bovirhinis PG43 16S ribosomal RNA (rrn) gene, partial sequenceU447661452ena29553

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycoplasmopsis bovirhinis NCTC10118GCA_900660515completencbi29553
66792Mycoplasma bovirhinis strain NCTC1011829553.8completepatric29553

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.013no
gram-positiveyes62.583no
anaerobicno90.823no
aerobicno95.657no
halophileno52.154no
spore-formingno98.331no
thermophileno97.532no
glucose-utilyes88.312no
motileno93.543no
glucose-fermentyes81.539no

External links

@ref: 15871

culture collection no.: DSM 21657, ATCC 19884, ATCC 27748, CIP 71.24, IFO 14857, NBRC 14857, NCTC 10118

straininfo link

  • @ref: 77980
  • straininfo: 13569

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15871Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21657)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21657
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33479Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10594
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77980Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13569.1StrainInfo: A central database for resolving microbial strain identifiers
116907Curators of the CIPCollection of Institut Pasteur (CIP 71.24)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2071.24