Strain identifier
BacDive ID: 8596
Type strain:
Species: Mycoplasmopsis bovirhinis
Strain Designation: 5M 331, 5M331, PG 43, PG43
Strain history: CIP <- 1971, P. Perreau: strain PG43 <- R. Leach: strain 5M 331
NCBI tax ID(s): 29553 (species)
General
@ref: 15871
BacDive-ID: 8596
DSM-Number: 21657
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Mycoplasmopsis bovirhinis 5M 331 is a mesophilic, Gram-negative animal pathogen that was isolated from bovine respiratory tract.
NCBI tax id
- NCBI tax id: 29553
- Matching level: species
strain history
@ref | history |
---|---|
15871 | <- J. K. Davis {2008} <- J. G. Tully <- R. H. Leach, NCTC; 5M 331 |
116907 | CIP <- 1971, P. Perreau: strain PG43 <- R. Leach: strain 5M 331 |
doi: 10.13145/bacdive8596.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Mycoplasmopsis
- species: Mycoplasmopsis bovirhinis
- full scientific name: Mycoplasmopsis bovirhinis (Leach 1967) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma bovirhinis
@ref: 15871
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Metamycoplasmataceae
genus: Mycoplasmopsis
species: Mycoplasmopsis bovirhinis
full scientific name: Mycoplasmopsis bovirhinis (Leach 1967) Gupta et al. 2018
strain designation: 5M 331, 5M331, PG 43, PG43
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.388
colony morphology
- @ref: 15871
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
15871 | SP4-Z MEDIUM (DSMZ Medium 1076b) | yes | https://mediadive.dsmz.de/medium/1076b | Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water |
33479 | MEDIUM 88 - for Mycoplasma and Acholeplasma | yes | Distilled water make up to (670.000 ml);PPLO broth (17.000 g);Sterile supplement - M00273 (210.000 ml);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml) | |
116907 | CIP Medium 88 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=88 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15871 | positive | growth | 37 | mesophilic |
33479 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
15871 | bovine respiratory tract |
116907 | Animal, Bovine, respiratory tract |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body-Site | #Organ | #Vascular system |
taxonmaps
- @ref: 69479
- File name: preview.99_24500.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_157;96_1694;97_2028;98_18420;99_24500&stattab=map
- Last taxonomy: Mycoplasma bovirhinis subclade
- 16S sequence: U44766
- Sequence Identity:
- Total samples: 1453
- soil counts: 6
- aquatic counts: 18
- animal counts: 1427
- plant counts: 2
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
15871 | yes | 2 | Risk group (German classification) |
116907 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycoplasma bovirhinis gene for 16S rRNA, partial sequence, strain: NBRC 14857 | AB680687 | 1434 | ena | 29553 |
20218 | Mycoplasma bovirhinis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AY729933 | 931 | ena | 29553 |
15871 | Mycoplasma bovirhinis PG43 16S ribosomal RNA (rrn) gene, partial sequence | U44766 | 1452 | ena | 29553 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycoplasmopsis bovirhinis NCTC10118 | GCA_900660515 | complete | ncbi | 29553 |
66792 | Mycoplasma bovirhinis strain NCTC10118 | 29553.8 | complete | patric | 29553 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 97.013 | no |
gram-positive | yes | 62.583 | no |
anaerobic | no | 90.823 | no |
aerobic | no | 95.657 | no |
halophile | no | 52.154 | no |
spore-forming | no | 98.331 | no |
thermophile | no | 97.532 | no |
glucose-util | yes | 88.312 | no |
motile | no | 93.543 | no |
glucose-ferment | yes | 81.539 | no |
External links
@ref: 15871
culture collection no.: DSM 21657, ATCC 19884, ATCC 27748, CIP 71.24, IFO 14857, NBRC 14857, NCTC 10118
straininfo link
- @ref: 77980
- straininfo: 13569
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15871 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21657) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21657 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
33479 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10594 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77980 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13569.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116907 | Curators of the CIP | Collection of Institut Pasteur (CIP 71.24) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2071.24 |