Strain identifier

BacDive ID: 8595

Type strain: Yes

Species: Metamycoplasma arthritidis

Strain Designation: Preston, PG6

Strain history: CIP <- 1996, ATCC <- R.G. Wittler: strain Preston <- D.G. Edward: strain PG6 <- L. Dienes <- W. Preston

NCBI tax ID(s): 2111 (species)

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General

@ref: 16142

BacDive-ID: 8595

DSM-Number: 22113

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen

description: Metamycoplasma arthritidis Preston is a mesophilic, Gram-negative animal pathogen that was isolated from knee joint of a rat.

NCBI tax id

  • NCBI tax id: 2111
  • Matching level: species

strain history

@refhistory
16142<- CIP <- ATCC <- R. G. Wittler; Preston <- D. G. Edward; PG6 <- L. Dienes <- W. Preston
116511CIP <- 1996, ATCC <- R.G. Wittler: strain Preston <- D.G. Edward: strain PG6 <- L. Dienes <- W. Preston

doi: 10.13145/bacdive8595.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmoidales
  • family: Metamycoplasmataceae
  • genus: Metamycoplasma
  • species: Metamycoplasma arthritidis
  • full scientific name: Metamycoplasma arthritidis (Sabin 1941) Gupta et al. 2018

  • synonyms

    @refsynonym
    20215Mycoplasma arthritidis
    20215Murimyces arthritidis

@ref: 16142

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Metamycoplasmataceae

genus: Metamycoplasma

species: Metamycoplasma arthritidis

full scientific name: Metamycoplasma arthritidis (Sabin 1941) Gupta et al. 2018

strain designation: Preston, PG6

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.806

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16142SP4-Z MEDIUM (DSMZ Medium 1076b)yeshttps://mediadive.dsmz.de/medium/1076bName: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
37188MEDIUM 89 - for MycoplasmayesDistilled water make up to (670.000 ml);PPLO broth (17.000 g);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00276 (210.000 ml)
116511CIP Medium 89yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=89

culture temp

@refgrowthtypetemperaturerange
16142positivegrowth37mesophilic
37188positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

@refsample type
16142knee joint of a rat
116511Animal, Rat, knee joint

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Limb#Joint
#Host Body-Site#Limb#Leg

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16142yes2Risk group (German classification)
1165112Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Mycoplasma arthritidis strain ATCC 19611 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
  • accession: AY973560
  • length: 864
  • database: ena
  • NCBI tax ID: 2111

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Metamycoplasma arthritidis NCTC10162GCA_900660715completencbi2111
66792Mycoplasma arthritidis strain NCTC101622111.3completepatric2111
66792Mycoplasma arthritidis NCTC101622874740507completeimg2111

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno97.052no
gram-positiveno50no
anaerobicno92.886no
aerobicno93.994no
halophileyes51.38no
spore-formingno98.107no
thermophileno97.245no
glucose-utilyes84.644no
motileno94.14no
glucose-fermentyes73.353no

External links

@ref: 16142

culture collection no.: DSM 22113, ATCC 19611, CIP 104678, IFO (now NBRC) 14860, NCTC 10162

straininfo link

  • @ref: 77979
  • straininfo: 37032

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16142Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22113)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22113
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37188Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16613
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77979Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37032.1StrainInfo: A central database for resolving microbial strain identifiers
116511Curators of the CIPCollection of Institut Pasteur (CIP 104678)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104678