Strain identifier
BacDive ID: 8590
Type strain: 
Species: Mycobacterium bacteremicum
Strain Designation: 328
Strain history: <- B. Beck, ATCC; ATCC 25791 <- M. Tsukamura
NCBI tax ID(s): 564198 (species)
version 8.1 (current version)
General
@ref: 17694
BacDive-ID: 8590
DSM-Number: 45578
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium bacteremicum 328 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 564198
- Matching level: species
strain history
- @ref: 17694
- history: <- B. Beck, ATCC; ATCC 25791 <- M. Tsukamura
doi: 10.13145/bacdive8590.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium bacteremicum
- full scientific name: Mycobacterium bacteremicum Brown-Elliott et al. 2012
synonyms
- @ref: 20215
- synonym: Mycolicibacterium bacteremicum
@ref: 17694
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium bacteremicum
full scientific name: Mycobacterium bacteremicum Brown-Elliott et al. 2012
strain designation: 328
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.412 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 17694
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 17694
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.904
Isolation, sampling and environmental information
isolation
- @ref: 17694
- sample type: soil
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 17694
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17694
- description: Mycobacterium bacteremicum strain ATCC 25791 16S ribosomal RNA gene, partial sequence
- accession: FJ172308
- length: 1453
- database: ena
- NCBI tax ID: 564198
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium bacteremicum DSM 45578 | GCA_002086115 | contig | ncbi | 564198 |
| 66792 | Mycobacterium bacteremicum strain DSM 45578 | 564198.3 | wgs | patric | 564198 |
| 66792 | Mycolicibacterium bacteremicum DSM 45578 | 2865526555 | draft | img | 564198 |
| 66792 | Mycolicibacterium bacteremicum DSM 45578 | GCA_025823285 | scaffold | ncbi | 564198 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 89 | no |
| gram-positive | yes | 89.794 | no |
| anaerobic | no | 99.568 | no |
| halophile | no | 89.2 | no |
| spore-forming | no | 84.1 | no |
| glucose-util | yes | 86.219 | no |
| flagellated | no | 97.979 | no |
| thermophile | no | 99.603 | yes |
| motile | no | 92.101 | no |
| aerobic | yes | 88.352 | no |
| glucose-ferment | no | 90.361 | no |
External links
@ref: 17694
culture collection no.: DSM 45578, ATCC 25791
straininfo link
- @ref: 77974
- straininfo: 47006
literature
- topic: Phylogeny
- Pubmed-ID: 20881180
- title: Mycobacterium neoaurum and Mycobacterium bacteremicum sp. nov. as causes of mycobacteremia.
- authors: Brown-Elliott BA, Wallace RJ Jr, Petti CA, Mann LB, McGlasson M, Chihara S, Smith GL, Painter P, Hail D, Wilson R, Simmon KE
- journal: J Clin Microbiol
- DOI: 10.1128/JCM.00853-10
- year: 2010
- mesh: Adolescent, Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents/pharmacology, Bacteremia/*microbiology, Catheter-Related Infections/microbiology, Child, Child, Preschool, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Drug Resistance, Bacterial, Female, Humans, Infant, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics/*isolation & purification, Mycobacterium Infections/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17694 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45578) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45578 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 77974 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47006.1 | StrainInfo: A central database for resolving microbial strain identifiers |