Strain identifier
BacDive ID: 8588
Type strain:
Species: Mycobacterium litorale
Strain Designation: F4
Strain history: J. Zhang F4.
NCBI tax ID(s): 758802 (species)
General
@ref: 18194
BacDive-ID: 8588
DSM-Number: 45785
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Mycobacterium litorale F4 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 758802
- Matching level: species
strain history
@ref | history |
---|---|
18194 | <- JCM; JCM 17423 <- J. Zhang; F4 |
67770 | J. Zhang F4. |
doi: 10.13145/bacdive8588.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium litorale
- full scientific name: Mycobacterium litorale Zhang et al. 2012
synonyms
- @ref: 20215
- synonym: Mycolicibacterium litorale
@ref: 18194
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium litorale
full scientific name: Mycobacterium litorale Zhang et al. 2012
strain designation: F4
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
30324 | positive | rod-shaped | ||
69480 | no | 93.836 | ||
69480 | positive | 100 |
pigmentation
- @ref: 30324
- production: no
Culture and growth conditions
culture medium
- @ref: 18194
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18194 | positive | growth | 37 | mesophilic |
30324 | positive | optimum | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 30324
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
30324 | no | |
69481 | no | 100 |
69480 | no | 99.965 |
metabolite utilization
- @ref: 30324
- Chebi-ID: 17632
- metabolite: nitrate
- utilization activity: +
- kind of utilization tested: reduction
enzymes
@ref | value | activity | ec |
---|---|---|---|
30324 | catalase | + | 1.11.1.6 |
30324 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
18194 | soil | Hainan Province, Haikou | China | CHN | Asia |
67770 | Soil | Haikou, Hainan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 18194
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18194
- description: Mycobacterium litorale strain F4 16S ribosomal RNA gene, partial sequence
- accession: GU997640
- length: 1380
- database: ena
- NCBI tax ID: 758802
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium litorale JCM 17423 | GCA_010731695 | complete | ncbi | 758802 |
66792 | Mycolicibacterium litorale strain CGMCC 4.5724 | 758802.10 | wgs | patric | 758802 |
66792 | Mycolicibacterium litorale strain JCM 17423 | 758802.12 | complete | patric | 758802 |
66792 | Mycolicibacterium litorale CGMCC 4.5724 | 2681812963 | draft | img | 758802 |
67770 | Mycolicibacterium litorale F4 | GCA_002007745 | complete | ncbi | 758802 |
67770 | Mycolicibacterium litorale CGMCC 4.5724 | GCA_004366555 | scaffold | ncbi | 758802 |
66792 | Mycolicibacterium litorale DSM 45785 | GCA_025823345 | contig | ncbi | 758802 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 90.855 | no |
flagellated | no | 98.465 | no |
gram-positive | yes | 89.047 | yes |
anaerobic | no | 99.495 | yes |
aerobic | yes | 91.357 | yes |
halophile | no | 87.773 | no |
spore-forming | no | 88.366 | yes |
glucose-util | yes | 88.009 | no |
thermophile | no | 99.304 | yes |
glucose-ferment | no | 90.786 | no |
External links
@ref: 18194
culture collection no.: DSM 45785, CGMCC 4.5724, JCM 17423
straininfo link
- @ref: 77972
- straininfo: 401655
literature
- topic: Phylogeny
- Pubmed-ID: 21742818
- title: Mycobacterium litorale sp. nov., a rapidly growing mycobacterium from soil.
- authors: Zhang Y, Zhang J, Fang C, Pang H, Fan J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033449-0
- year: 2011
- mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Chaperonin 60/genetics, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
18194 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45785) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45785 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30324 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26665 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77972 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401655.1 | StrainInfo: A central database for resolving microbial strain identifiers |