Strain identifier

BacDive ID: 8586

Type strain: Yes

Species: Mycobacterium algericum

Strain Designation: Bejaia

Strain history: CIP <- 2010, P. Keller, Zurich Univ., Zürich, Switzerland: strain Bejaia <- Algeria

NCBI tax ID(s): 723879 (strain), 1288388 (species)

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General

@ref: 17220

BacDive-ID: 8586

DSM-Number: 45454

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Mycobacterium algericum Bejaia is a mesophilic animal pathogen that was isolated from lung lesion of an Algerian goat.

NCBI tax id

NCBI tax idMatching level
723879strain
1288388species

strain history

@refhistory
17220<- M. Ballif, Swiss Propical Public Health Inst.; strain Bejaia <- N. Sahraoui, Université Saad Dahlab, Algeria
67770CIP 110121 <-- P. M. Keller; Univ. of Zurich, Switzerland; Bejaia.
116222CIP <- 2010, P. Keller, Zurich Univ., Zürich, Switzerland: strain Bejaia <- Algeria

doi: 10.13145/bacdive8586.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium algericum
  • full scientific name: Mycobacterium algericum Sahraoui et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacter algericus

@ref: 17220

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium algericum

full scientific name: Mycobacterium algericum Sahraoui et al. 2011 emend. Nouioui et al. 2018

strain designation: Bejaia

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.499
69480100positive
116222nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17220MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
41219MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116222CIP Medium 93yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=93
116222CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
17220positivegrowth37mesophilic
41219positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.055

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11622217632nitrate-reduction
11622216301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11622235581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116222oxidase-
116222catalase+1.11.1.6
116222urease-3.5.1.5
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
17220--+++/-+----+--+--+/----
116222-+++-+----+--+--+---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
17220+------+------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
17220lung lesion of an Algerian goatSouk El TenineAlgeriaDZAAfrica
67770Lung lesion of a goatAlgeriaDZAAfrica
116222Animal, GoatBejaïaAlgeriaDZAAfrica2008

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Oral cavity and airways#Lung
#Host Body-Site#Other#Wound

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
17220yes, in single cases1Risk group (German classification)
1162221Risk group (French classification)

Sequence information

16S sequences

  • @ref: 17220
  • description: Mycobacterium algericum DSM 45454 16S ribosomal RNA gene, partial sequence
  • accession: GU564404
  • length: 1521
  • database: ena
  • NCBI tax ID: 723879

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacter algericus JCM 30723GCA_010723515contigncbi1288388
66792Mycobacterium algericum DSM 45454 strain DSM 45454723879.3wgspatric723879
66792Mycolicibacter algericus strain JCM 307231288388.5wgspatric1288388
66792Mycolicibacter algericus JCM 307232894597875draftimg1288388
67770Mycolicibacter algericus DSM 45454GCA_002086455contigncbi723879
66792Mycolicibacter algericus DSM 45454GCA_025821685contigncbi723879

GC content

  • @ref: 67770
  • GC-content: 68.3
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno84no
motileno93.915no
flagellatedno98.465no
gram-positiveyes93.216no
anaerobicno99.196no
aerobicyes89.041no
halophileno89.946no
spore-formingno87.999no
glucose-utilyes52.87yes
thermophileno97.446yes
glucose-fermentno91.911no

External links

@ref: 17220

culture collection no.: DSM 45454, CIP 110121, TBE 500028/10, JCM 30723

straininfo link

  • @ref: 77970
  • straininfo: 377874

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20833885Mycobacterium algericum sp. nov., a novel rapidly growing species related to the Mycobacterium terrae complex and associated with goat lung lesions.Sahraoui N, Ballif M, Zelleg S, Yousfi N, Ritter C, Friedel U, Amstutz B, Yala D, Boulahbal F, Guetarni D, Zinsstag J, Keller PMInt J Syst Evol Microbiol10.1099/ijs.0.024851-02010Animals, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Goat Diseases/*microbiology, Goats, Lung/*microbiology, Molecular Sequence Data, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Mycobacterium Infections/microbiology/*veterinary, Nontuberculous Mycobacteria/classification/genetics/isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny35679111Mycolicibacter acidiphilus sp. nov., an extremely acid-tolerant member of the genus Mycolicibacter.Xia J, Ni G, Wang Y, Zheng M, Hu SInt J Syst Evol Microbiol10.1099/ijsem.0.0054192022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Nontuberculous Mycobacteria/genetics, *Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
17220Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45454)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45454
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41219Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7944
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77970Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377874.1StrainInfo: A central database for resolving microbial strain identifiers
116222Curators of the CIPCollection of Institut Pasteur (CIP 110121)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110121