Strain identifier
BacDive ID: 8584
Type strain:
Species: Mycobacterium sherrisii
Strain Designation: 4773, 4773/92
Strain history: <- E. Tortoli, Firenze, Italy; 4773 <- S. Rangaraj <- E. C. Böttger, Inst. for Med. Microbiology, Hannover
NCBI tax ID(s): 243061 (species)
General
@ref: 16816
BacDive-ID: 8584
DSM-Number: 45441
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium sherrisii 4773 is a mesophilic bacterium that was isolated from human clinical specimen.
NCBI tax id
- NCBI tax id: 243061
- Matching level: species
strain history
- @ref: 16816
- history: <- E. Tortoli, Firenze, Italy; 4773 <- S. Rangaraj <- E. C. Böttger, Inst. for Med. Microbiology, Hannover
doi: 10.13145/bacdive8584.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium sherrisii
- full scientific name: Mycobacterium sherrisii van Ingen et al. 2011
@ref: 16816
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium sherrisii
full scientific name: Mycobacterium sherrisii van Ingen et al. 2011 emend. Nouioui et al. 2018
strain designation: 4773, 4773/92
type strain: yes
Morphology
multimedia
- @ref: 16816
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45441.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16816
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 16816
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16816
- sample type: human clinical specimen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Infection | #Patient | |
#Infection | #Medical environment | #Clinic |
#Infection | #Patient | #Specimen |
Safety information
risk assessment
- @ref: 16816
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16816
- description: Mycobacterium sherrisii 16S ribosomal RNA gene, partial sequence
- accession: AY353699
- length: 1510
- database: ena
- NCBI tax ID: 243061
Genome sequences
- @ref: 66792
- description: Mycobacterium sherrisii DSM 45441
- accession: GCA_025822045
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 243061
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.854 | no |
flagellated | no | 98.831 | no |
gram-positive | yes | 88.731 | no |
anaerobic | no | 99.278 | no |
aerobic | yes | 90.446 | no |
halophile | no | 95.07 | no |
spore-forming | no | 88.41 | no |
glucose-ferment | no | 90.05 | no |
thermophile | no | 97.957 | no |
glucose-util | yes | 74.154 | no |
External links
@ref: 16816
culture collection no.: DSM 45441, ATCC BAA 832
straininfo link
- @ref: 77968
- straininfo: 129154
literature
- topic: Phylogeny
- Pubmed-ID: 20639227
- title: Mycobacterium sherrisii sp. nov., a slow-growing non-chromogenic species.
- authors: van Ingen J, Tortoli E, Selvarangan R, Coyle MB, Crump JA, Morrissey AB, Dekhuijzen PNR, Boeree MJ, van Soolingen D
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.024752-0
- year: 2010
- mesh: Africa, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cell Wall/chemistry, Chaperonin 60/genetics, Chromatography, High Pressure Liquid, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Enzyme Stability, Enzymes/metabolism, Hot Temperature, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Mycolic Acids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Time Factors
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16816 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45441) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45441 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
77968 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID129154.1 | StrainInfo: A central database for resolving microbial strain identifiers |