Strain identifier

BacDive ID: 8584

Type strain: Yes

Species: Mycobacterium sherrisii

Strain Designation: 4773, 4773/92

Strain history: <- E. Tortoli, Firenze, Italy; 4773 <- S. Rangaraj <- E. C. Böttger, Inst. for Med. Microbiology, Hannover

NCBI tax ID(s): 243061 (species)

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General

@ref: 16816

BacDive-ID: 8584

DSM-Number: 45441

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium sherrisii 4773 is a mesophilic bacterium that was isolated from human clinical specimen.

NCBI tax id

  • NCBI tax id: 243061
  • Matching level: species

strain history

  • @ref: 16816
  • history: <- E. Tortoli, Firenze, Italy; 4773 <- S. Rangaraj <- E. C. Böttger, Inst. for Med. Microbiology, Hannover

doi: 10.13145/bacdive8584.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium sherrisii
  • full scientific name: Mycobacterium sherrisii van Ingen et al. 2011

@ref: 16816

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium sherrisii

full scientific name: Mycobacterium sherrisii van Ingen et al. 2011 emend. Nouioui et al. 2018

strain designation: 4773, 4773/92

type strain: yes

Morphology

multimedia

  • @ref: 16816
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45441.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16816
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

  • @ref: 16816
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 16816
  • sample type: human clinical specimen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Infection#Patient
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen

Safety information

risk assessment

  • @ref: 16816
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16816
  • description: Mycobacterium sherrisii 16S ribosomal RNA gene, partial sequence
  • accession: AY353699
  • length: 1510
  • database: ena
  • NCBI tax ID: 243061

Genome sequences

  • @ref: 66792
  • description: Mycobacterium sherrisii DSM 45441
  • accession: GCA_025822045
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 243061

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.854no
flagellatedno98.831no
gram-positiveyes88.731no
anaerobicno99.278no
aerobicyes90.446no
halophileno95.07no
spore-formingno88.41no
glucose-fermentno90.05no
thermophileno97.957no
glucose-utilyes74.154no

External links

@ref: 16816

culture collection no.: DSM 45441, ATCC BAA 832

straininfo link

  • @ref: 77968
  • straininfo: 129154

literature

  • topic: Phylogeny
  • Pubmed-ID: 20639227
  • title: Mycobacterium sherrisii sp. nov., a slow-growing non-chromogenic species.
  • authors: van Ingen J, Tortoli E, Selvarangan R, Coyle MB, Crump JA, Morrissey AB, Dekhuijzen PNR, Boeree MJ, van Soolingen D
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.024752-0
  • year: 2010
  • mesh: Africa, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cell Wall/chemistry, Chaperonin 60/genetics, Chromatography, High Pressure Liquid, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Enzyme Stability, Enzymes/metabolism, Hot Temperature, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Mycolic Acids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Time Factors
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
16816Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45441)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45441
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77968Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID129154.1StrainInfo: A central database for resolving microbial strain identifiers