Strain identifier
BacDive ID: 8570
Type strain:
Species: Mycobacterium chelonae
Strain Designation: RAMC, Friedman, 14 042 0003, 1544
Strain history: CIP <- 1995, V. Vincent, Inst. Pasteur, Paris, France: strain 14 042 0003 <- ATCC <- TMC: strain 1544 <- NCTC <- F.M. Perry: strain Friedman
NCBI tax ID(s): 1460372 (strain), 1774 (species)
General
@ref: 11257
BacDive-ID: 8570
DSM-Number: 43804
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, human pathogen
description: Mycobacterium chelonae RAMC is an aerobe, mesophilic human pathogen that was isolated from tortoise tubercle.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1460372 | strain |
1774 | species |
strain history
@ref | history |
---|---|
11257 | <- NCTC; NCTC 946 <- F.M. Perry; RAMC |
67770 | M. Tsukamura 19054 <-- J. L. Stanford 78 <-- NCTC 946 <-- F. M. Perry strain Friedman. |
118228 | CIP <- 1995, V. Vincent, Inst. Pasteur, Paris, France: strain 14 042 0003 <- ATCC <- TMC: strain 1544 <- NCTC <- F.M. Perry: strain Friedman |
doi: 10.13145/bacdive8570.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium chelonae
- full scientific name: Mycobacterium chelonae corrig. Bergey et al. 1923 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium chelonei 20215 Mycobacteroides chelonae
@ref: 11257
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium chelonae
full scientific name: Mycobacterium chelonae Bergey et al. 1923 emend. Kim et al. 2017 emend. Nouioui et al. 2018
strain designation: RAMC, Friedman, 14 042 0003, 1544
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 93.691 | ||
69480 | 100 | positive | ||
118228 | no | rod-shaped |
colony morphology
- @ref: 57692
- incubation period: 4-5 days
multimedia
- @ref: 11257
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43804.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11257 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
36330 | MEDIUM 55 - for Mycobacterium | yes | ||
118228 | CIP Medium 55 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11257 | positive | growth | 37 | mesophilic |
36330 | positive | growth | 37 | mesophilic |
43559 | positive | growth | 25-30 | mesophilic |
43559 | no | growth | 45 | thermophilic |
43559 | no | growth | 37 | mesophilic |
57692 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
118228 | positive | growth | 22-37 | |
118228 | no | growth | 10 | psychrophilic |
118228 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
57692 | aerobe |
118228 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.224 |
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
118228 | 16947 | citrate | - | carbon source |
118228 | 4853 | esculin | - | hydrolysis |
118228 | 606565 | hippurate | - | hydrolysis |
118228 | 17632 | nitrate | - | reduction |
118228 | 16301 | nitrite | - | reduction |
118228 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 118228
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 118228
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
43559 | esterase (C 4) | + | |
43559 | esterase Lipase (C 8) | + | |
43559 | lipase (C 14) | + | |
43559 | leucine arylamidase | + | 3.4.11.1 |
43559 | valine arylamidase | + | |
43559 | cystine arylamidase | + | 3.4.11.3 |
43559 | acid phosphatase | + | 3.1.3.2 |
43559 | alpha-glucosidase | + | 3.2.1.20 |
43559 | beta-glucosidase | + | 3.2.1.21 |
43559 | alpha-mannosidase | + | 3.2.1.24 |
43559 | alkaline phosphatase | - | 3.1.3.1 |
43559 | trypsin | - | 3.4.21.4 |
43559 | alpha-chymotrypsin | - | 3.4.21.1 |
43559 | naphthol-AS-BI-phosphohydrolase | - | |
43559 | alpha-galactosidase | - | 3.2.1.22 |
43559 | beta-glucuronidase | - | 3.2.1.31 |
43559 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
43559 | alpha-fucosidase | - | 3.2.1.51 |
43559 | beta-galactosidase | +/- | 3.2.1.23 |
118228 | oxidase | - | |
118228 | beta-galactosidase | - | 3.2.1.23 |
118228 | alcohol dehydrogenase | - | 1.1.1.1 |
118228 | catalase | + | 1.11.1.6 |
118228 | gamma-glutamyltransferase | + | 2.3.2.2 |
118228 | lysine decarboxylase | - | 4.1.1.18 |
118228 | ornithine decarboxylase | - | 4.1.1.17 |
118228 | tryptophan deaminase | - | |
118228 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118228 | - | - | + | + | - | + | + | + | - | + | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | isolation date |
---|---|---|
11257 | tortoise tubercle | |
57692 | Tortoise tubercle | |
67770 | Tortoise tubercle | |
118228 | Tortoise, tubercle | 1921 |
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Reptilia |
#Host Body-Site |
taxonmaps
- @ref: 69479
- File name: preview.99_54.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
- Last taxonomy: Mycobacteroides
- 16S sequence: AF480594
- Sequence Identity:
- Total samples: 21994
- soil counts: 7046
- aquatic counts: 6199
- animal counts: 7007
- plant counts: 1742
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
11257 | yes | yes | 2 | Risk group (German classification) |
118228 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycobacterium chelonae gene for 16S ribosomal RNA, partial sequence, strain: JCM 6388 | AB548610 | 1468 | ena | 1774 |
20218 | Mycobacterium chelonae DNA, 16S-23S ribosomal RNA intergenic spacer, partial sequence, strain: JCM 6388 | AB548611 | 294 | ena | 1774 |
20218 | Mycobacterium chelonae strain ATCC35752 16S ribosomal RNA (rrs) gene, partial sequence | AF059852 | 171 | ena | 1774 |
20218 | Mycobacterium chelonae 16S ribosomal RNA gene, partial sequence | AF480594 | 1441 | ena | 1774 |
20218 | Mycobacterium chelonae 16S ribosomal RNA gene and 16S-23S intergenic spacer, partial sequence | AY498739 | 253 | ena | 1774 |
20218 | M.chelonae 16S rRNA gene | X82236 | 1071 | ena | 1774 |
20218 | Mycobacterium chelonae murA and 16S rRNA gene | Y13911 | 904 | ena | 1774 |
67770 | Mycobacteroides chelonae strain CIP 104535 16S ribosomal RNA gene, partial sequence | AY457072 | 1481 | ena | 1774 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacteroides chelonae CCUG 47445 | GCA_001632805 | complete | ncbi | 1460372 |
66792 | [Mycobacterium] chelonae subsp. chelonae DSM 43804 | GCA_004355245 | complete | ncbi | 2099321 |
66792 | Mycobacteroides chelonae ATCC 35752 | GCA_000971805 | chromosome | ncbi | 1774 |
66792 | Mycobacterium chelonae CCUG 47445 | 1460372.6 | complete | patric | 1460372 |
66792 | Mycobacterium chelonae strain ATCC 35752 | 1774.35 | complete | patric | 1774 |
66792 | Mycobacterium chelonae strain ATCC 35752 | 1774.83 | wgs | patric | 1774 |
66792 | Mycobacterium chelonae strain ATCC 35752 | 1774.68 | wgs | patric | 1774 |
66792 | Mycobacteroides chelonae strain NCTC946 | 1774.91 | complete | patric | 1774 |
66792 | [Mycobacterium] chelonae subsp. chelonae strain DSM 43804 | 2099321.3 | complete | patric | 2099321 |
66792 | Mycobacteroides chelonae CCUG 47445 | 2687453534 | complete | img | 1460372 |
66792 | Mycobacteroides chelonae DSM 43804 | 2857061820 | complete | img | 1774 |
67770 | Mycobacteroides chelonae ATCC 35752 | GCA_002102055 | contig | ncbi | 1774 |
67770 | Mycobacteroides chelonae NCTC946 | GCA_900637115 | complete | ncbi | 1774 |
67770 | Mycobacteroides chelonae ATCC 35752 | GCA_001942545 | contig | ncbi | 1774 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 63.96 | genome sequence analysis |
67770 | 63.9 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
flagellated | no | 98.501 | no |
gram-positive | yes | 89.945 | no |
anaerobic | no | 99.453 | yes |
aerobic | yes | 89.988 | yes |
halophile | no | 91.039 | no |
spore-forming | no | 85.605 | no |
glucose-util | yes | 83.177 | no |
motile | no | 95.92 | no |
thermophile | no | 99.45 | no |
glucose-ferment | no | 93.843 | no |
External links
@ref: 11257
culture collection no.: DSM 43804, ATCC 35752, CCUG 47445, IMET 10609, JCM 6388, NCTC 946, TMC 1544, CIP 104535, KCTC 9505, NCIMB 1474
straininfo link
- @ref: 77954
- straininfo: 41266
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1581184 | Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov. | Kusunoki S, Ezaki T | Int J Syst Bacteriol | 10.1099/00207713-42-2-240 | 1992 | Colorimetry, DNA, Bacterial, Mycobacterium/*classification/genetics, Mycobacterium chelonae/*classification/genetics, Nucleic Acid Hybridization, Phenotype | Phenotype |
Enzymology | 9190297 | Glutaraldehyde-resistant Mycobacterium chelonae from endoscope washer disinfectors. | Griffiths PA, Babb JR, Bradley CR, Fraise AP | J Appl Microbiol | 10.1046/j.1365-2672.1997.00171.x | 1997 | Disinfectants/pharmacology, Disinfection/*instrumentation/methods, Drug Resistance, Microbial, *Endoscopes, *Equipment Contamination, Glutaral/*pharmacology, Microbial Sensitivity Tests, Mycobacterium chelonae/*drug effects/isolation & purification | Phylogeny |
Pathogenicity | 10063473 | Mycobactericidal activity of selected disinfectants using a quantitative suspension test. | Griffiths PA, Babb JR, Fraise AP | J Hosp Infect | 10.1016/s0195-6701(99)90048-8 | 1999 | Aldehydes/pharmacology, Chlorine Compounds/pharmacology, Disinfectants/*pharmacology, Drug Combinations, Drug Evaluation, Preclinical, Endoscopes/microbiology, Equipment Contamination/prevention & control, Formaldehyde/pharmacology, Furans/pharmacology, Glutaral/pharmacology, Humans, Microbial Sensitivity Tests/*methods, Mycobacterium avium Complex/classification/*drug effects, Mycobacterium chelonae/classification/*drug effects, Mycobacterium fortuitum/classification/*drug effects, Mycobacterium tuberculosis/classification/*drug effects, Oxides/pharmacology, Peroxides/pharmacology, Serotyping, Sulfuric Acids/pharmacology | Phylogeny |
Pathogenicity | 10404314 | Reduced glutaraldehyde susceptibility in Mycobacterium chelonae associated with altered cell wall polysaccharides. | Manzoor SE, Lambert PA, Griffiths PA, Gill MJ, Fraise AP | J Antimicrob Chemother | 10.1093/jac/43.6.759 | 1999 | Aldehydes/pharmacology, Anti-Bacterial Agents/pharmacology, Cell Wall/chemistry/*physiology, Disinfectants/pharmacology, Drug Resistance, Microbial/physiology, Fatty Acids/analysis, Galactans/analysis, Glutaral/*pharmacology, Mannans/analysis, Microbial Sensitivity Tests, Mycobacterium chelonae/*drug effects/metabolism/physiology, Mycolic Acids/analysis, Polysaccharides, Bacterial/chemistry/*physiology | Metabolism |
Pathogenicity | 11439009 | Comparison of the mycobactericidal activity of ortho- phthalaldehyde, glutaraldehyde and other dialdehydes by a quantitative suspension test. | Fraud S, Maillard JY, Russell AD | J Hosp Infect | 10.1053/jhin.2001.1009 | 2001 | Bacteriological Techniques, Disinfectants/chemistry/*pharmacology, *Disinfection, Equipment Contamination, Glutaral/chemistry/*pharmacology, Mycobacterium chelonae/*drug effects, Nontuberculous Mycobacteria/*drug effects, o-Phthalaldehyde/chemistry/*pharmacology | |
Pathogenicity | 12615857 | Effects of ortho-phthalaldehyde, glutaraldehyde and chlorhexidine diacetate on Mycobacterium chelonae and Mycobacterium abscessus strains with modified permeability. | Fraud S, Hann AC, Maillard JY, Russell AD | J Antimicrob Chemother | 10.1093/jac/dkg099 | 2003 | Cell Wall/drug effects/metabolism/ultrastructure, Chlorhexidine/*pharmacology, Glutaral/*pharmacology, Humans, Mycobacterium/metabolism/physiology/ultrastructure, Mycobacterium chelonae/metabolism/*physiology/ultrastructure, Permeability/drug effects, o-Phthalaldehyde/*pharmacology | Metabolism |
Pathogenicity | 16332730 | Use of a new alginate film test to study the bactericidal efficacy of the high-level disinfectant ortho-phthalaldehyde. | Shackelford JC, Hanlon GW, Maillard JY | J Antimicrob Chemother | 10.1093/jac/dki432 | 2005 | *Alginates, Bacteria/*drug effects, Disinfectants/*pharmacology, Microbial Sensitivity Tests/*methods, Mycobacterium chelonae/drug effects, Pseudomonas aeruginosa/drug effects, Reproducibility of Results, o-Phthalaldehyde/*pharmacology | |
Cultivation | 22197720 | Comparative study with two different enrichments in the culture media used in the disinfectant efficacy assay. | Sabagh BP, Souto Ada S, Reis LM, Silva SA, Pereira DC, Neves Mde C, Pinheiro RR, Duarte RS, Miyazaki NH, Boas MH | J Microbiol Methods | 10.1016/j.mimet.2011.12.004 | 2011 | Animals, Brazil, Cattle, Culture Media/*chemistry, Disinfectants/*pharmacology, Glucose/pharmacology, Glutaral/pharmacology, Microbial Sensitivity Tests/*methods, Mycobacterium/*drug effects/growth & development, Statistics, Nonparametric | Pathogenicity |
Metabolism | 24739882 | Gene replacement in Mycobacterium chelonae: application to the construction of porin knock-out mutants. | Calado Nogueira de Moura V, Gibbs S, Jackson M | PLoS One | 10.1371/journal.pone.0094951 | 2014 | Alleles, Amino Acid Sequence, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/*genetics/metabolism, Biological Transport, Gene Knockout Techniques/*methods, Genetic Engineering/*methods, Glucose/metabolism/pharmacokinetics, Microbial Sensitivity Tests, Microbial Viability/drug effects, Molecular Sequence Data, *Mutation, Mycobacterium chelonae/*genetics/growth & development/metabolism, Porins/*genetics/metabolism, Sequence Homology, Amino Acid, Temperature, Transformation, Genetic | Genetics |
Genetics | 26021923 | Draft Genome Sequence of Mycobacterium chelonae Type Strain ATCC 35752. | Hasan NA, Davidson RM, de Moura VC, Garcia BJ, Reynolds PR, Epperson LE, Farias-Hesson E, DeGroote MA, Jackson M, Strong M | Genome Announc | 10.1128/genomeA.00536-15 | 2015 | ||
Genetics | 27284158 | Complete Genome Sequence of Mycobacterium chelonae Type Strain CCUG 47445, a Rapidly Growing Species of Nontuberculous Mycobacteria. | Jaen-Luchoro D, Salva-Serra F, Aliaga-Lozano F, Segui C, Busquets A, Ramirez A, Ruiz M, Gomila M, Lalucat J, Bennasar-Figueras A | Genome Announc | 10.1128/genomeA.00550-16 | 2016 | ||
Pathogenicity | 28190461 | Detection of Mycobacterium chelonae, Mycobacterium abscessus Group, and Mycobacterium fortuitum Complex by a Multiplex Real-Time PCR Directly from Clinical Samples Using the BD MAX System. | Rocchetti TT, Silbert S, Gostnell A, Kubasek C, Campos Pignatari AC, Widen R | J Mol Diagn | 10.1016/j.jmoldx.2016.10.004 | 2017 | Humans, *Multiplex Polymerase Chain Reaction/instrumentation/methods, Mycobacterium/*genetics, Mycobacterium Infections/*diagnosis/*microbiology, Mycobacterium chelonae/*genetics, Mycobacterium fortuitum/*genetics, *Real-Time Polymerase Chain Reaction/instrumentation/methods, Reproducibility of Results, Sensitivity and Specificity | |
Pathogenicity | 28662943 | Discovery of novel antimycobacterial drug therapy in biofilm of pathogenic nontuberculous mycobacterial keratitis. | Aung TT, Chor WHJ, Yam JKH, Givskov M, Yang L, Beuerman RW | Ocul Surf | 10.1016/j.jtos.2017.06.002 | 2017 | Animals, *Biofilms, Keratitis, Mice, Mycobacterium Infections, Nontuberculous, Mycobacterium chelonae, Mycobacterium fortuitum | |
Phylogeny | 28895525 | Description of Mycobacterium chelonae subsp. bovis subsp. nov., isolated from cattle (Bos taurus coreanae), emended description of Mycobacterium chelonae and creation of Mycobacterium chelonae subsp. chelonae subsp. nov. | Kim BJ, Kim GN, Kim BR, Jeon CO, Jeong J, Lee SH, Lim JH, Lee SH, Kim CK, Kook YH, Kim BJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002217 | 2017 | Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Lymph Nodes/*microbiology, Multilocus Sequence Typing, Mycobacterium chelonae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 30311876 | A description of Mycobacterium chelonae subsp. gwanakae subsp. nov., a rapidly growing mycobacterium with a smooth colony phenotype due to glycopeptidolipids. | Kim BJ, Kim BR, Jeong J, Lim JH, Park SH, Lee SH, Kim CK, Kook YH, Kim BJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003056 | 2018 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Multilocus Sequence Typing, Mycobacterium Infections/microbiology, Mycobacterium chelonae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sputum/*microbiology | Pathogenicity |
Phylogeny | 30908517 | Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns. | Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ Jr, Hasan NA, Reischl U, Sanchez S | PLoS One | 10.1371/journal.pone.0214274 | 2019 | Animals, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, Biofilms, Humans, Microbial Sensitivity Tests, Mycobacterium abscessus/*classification/drug effects/isolation & purification, Phylogeny, Polymorphism, Single Nucleotide, RNA, Ribosomal, 16S/genetics, Species Specificity, Whole Genome Sequencing/*methods | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11257 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43804) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43804 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
36330 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16454 | ||||
43559 | Byoung-Jun Kim, Ga-Na Kim, Bo-Ram Kim, Che Ok Jeon, Joseph Jeong, Seon Ho Lee, Ji-Hun Lim, Seung-Heon Lee, Chang Ki Kim, Yoon-Hoh Kook, Bum-Joon Kim | 10.1099/ijsem.0.002217 | Description of Mycobacterium chelonae subsp. bovis subsp. nov., isolated from cattle (Bos taurus coreanae), emended description of Mycobacterium chelonae and creation of Mycobacterium chelonae subsp. chelonae subsp. nov. | IJSEM 67: 3882-3887 2017 | 28895525 | |
57692 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 47445) | https://www.ccug.se/strain?id=47445 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77954 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41266.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118228 | Curators of the CIP | Collection of Institut Pasteur (CIP 104535) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104535 |