Strain identifier

BacDive ID: 8551

Type strain: Yes

Species: Mycobacterium conceptionense

Strain Designation: D16

Culture col. no.: JCM 15299, DSM 45102, CCUG 50187, CIP 108544

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General

@ref: 12344

BacDive-ID: 8551

DSM-Number: 45102

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, human pathogen

description: Mycobacterium conceptionense D16 is an aerobe, mesophilic human pathogen that was isolated from human bone tissue biospy, wound liquid outflow.

strain history

doi: 10.13145/bacdive8551.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium conceptionense
  • full scientific name: Mycobacterium conceptionense Adékambi et al. 2006
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium conceptionense

@ref: 12344

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium conceptionense

full scientific name: Mycobacterium conceptionense Adékambi et al. 2006 emend. Nouioui et al. 2018

strain designation: D16

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
12344MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
12344COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
36345MEDIUM 55 - for Mycobacteriumyes

culture temp

@refgrowthtypetemperaturerange
12344positivegrowth37mesophilic
36345positivegrowth30mesophilic
58777positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58777
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationsampling datecountryorigin.countrycontinent
12344human bone tissue biospy, wound liquid outflowReunion Island, Indian Ocean
58777Human bone tissue biopsy,wound liquid outflow2002-09-01ReunionFRAAfrica

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Host#Human
#Host Body-Site#Other#Bone
#Host Body-Site#Other#Wound

Safety information

risk assessment

  • @ref: 12344
  • pathogenicity human: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium conceptionense partial 16S rRNA gene, type strain CIP 108544TAM884281551ena451644
20218Mycobacterium conceptionense CIP 108544 16S ribosomal RNA gene, partial sequenceAY8596841483ena451644
20218Mycobacterium conceptionense strain CIP 108544 16S ribosomal RNA gene, partial sequenceEU191913457ena451644

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium conceptionense CCUG 50187GCA_002102065contigncbi451644
66792Mycolicibacterium conceptionense D16GCA_001052995scaffoldncbi451644
66792Mycolicibacterium conceptionense ACS2995GCA_001667225contigncbi451644
66792Mycolicibacterium conceptionense ACS1953GCA_001667235contigncbi451644
66792Mycolicibacterium conceptionense ACS4694GCA_001667305contigncbi451644
66792Mycolicibacterium conceptionense MLEGCA_001077745contigncbi451644
66792Mycolicibacterium conceptionense ACS2998GCA_001667965contigncbi451644
66792Mycolicibacterium conceptionense ACS2738GCA_001665335contigncbi451644
66792Mycolicibacterium conceptionense IS-1222GCA_001954205contigncbi451644
66792Mycolicibacterium conceptionense 1165613.5GCA_001673265contigncbi451644
66792Mycolicibacterium conceptionense GA-1041GCA_001954125contigncbi451644
66792Mycolicibacterium conceptionense IS-2586GCA_001954235contigncbi451644
66792Mycolicibacterium conceptionense JR2009GCA_000233935contigncbi451644
66792Mycobacterium conceptionense strain 1165613.5451644.12wgspatric451644
66792Mycobacterium conceptionense strain ACS1953451644.9wgspatric451644
66792Mycobacterium conceptionense strain ACS2738451644.7wgspatric451644
66792Mycobacterium conceptionense strain ACS2995451644.8wgspatric451644
66792Mycobacterium conceptionense strain ACS2998451644.11wgspatric451644
66792Mycobacterium conceptionense strain ACS4694451644.10wgspatric451644
66792Mycobacterium conceptionense strain CCUG 50187451644.16wgspatric451644
66792Mycobacterium conceptionense strain D16451644.4wgspatric451644
66792Mycobacterium conceptionense strain GA-1041451644.13wgspatric451644
66792Mycobacterium conceptionense strain IS-1222451644.14wgspatric451644
66792Mycobacterium conceptionense strain IS-2586451644.15wgspatric451644
66792Mycobacterium conceptionense strain MLE451644.5wgspatric451644

GC content

  • @ref: 12344
  • GC-content: 64

External links

@ref: 12344

culture collection no.: JCM 15299, DSM 45102, CCUG 50187, CIP 108544

straininfo link

@refpassport
20218http://www.straininfo.net/strains/720775
20218http://www.straininfo.net/strains/690088
20218http://www.straininfo.net/strains/674702

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12344Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45102)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45102
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36345Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6178
58777Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50187)https://www.ccug.se/strain?id=50187
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)