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Strain identifier

BacDive ID: 8535

Type strain: Yes

Species: Mycobacterium pyrenivorans

Strain Designation: 17A3, ID 705-01

Strain history: NRRL B-24349 <-- DSM 44605 <-- I. Schuphan 17A3.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11920

BacDive-ID: 8535

DSM-Number: 44605

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium pyrenivorans 17A3 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1305860strain
187102species

strain history

doi: 10.13145/bacdive8535.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium pyrenivorans
  • full scientific name: Mycobacterium pyrenivorans Derz et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium pyrenivorans

@ref: 11920

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium pyrenivorans

full scientific name: Mycobacterium pyrenivorans Derz et al. 2004

strain designation: 17A3, ID 705-01

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 89.695

multimedia

  • @ref: 11920
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44605.jpg
  • caption: Medium 645 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11920MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
36343MEDIUM 93 - for Mycobacterium avium subsp. sylvaticumyesDistilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
11920positivegrowth28mesophilic
36343positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.462

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 78.976

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11920soilÜbach-PalenbergGermanyDEUEurope
67770Contaminated soil of a former coking plantÜbach-PalenbergGermanyDEUEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 11920
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium pyrenivorans strain DSM 44605 16S ribosomal RNA gene, partial sequenceDQ124113536ena187102
11920Mycobacterium sp. DSM 44605 16S rRNA gene, strain DSM 44605AJ4313711481ena187102

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium pyrenivorans JCM 15927 JCM 15927GCA_001314105contigncbi1305860
66792Mycolicibacterium pyrenivorans JCM 159271305860.4wgspatric1305860
66792Mycolicibacterium pyrenivorans JCM 159272734481971draftimg1305860
66792Mycobacterium pyrenivorans DSM 44605GCA_025821625scaffoldncbi187102
66792Streptococcus agalactiae BE-PW-162GCA_001694615contigpatric1311

External links

@ref: 11920

culture collection no.: DSM 44605, CIP 108596, NRRL B-24349, JCM 15927

straininfo link

@refpassport
20218http://www.straininfo.net/strains/295691
20218http://www.straininfo.net/strains/534375
20218http://www.straininfo.net/strains/382788

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15545477Mycobacterium pyrenivorans sp. nov., a novel polycyclic-aromatic-hydrocarbon-degrading species.Derz K, Klinner U, Schuphan I, Stackebrandt E, Kroppenstedt RMInt J Syst Evol Microbiol10.1099/ijs.0.03003-02004Bacterial Typing Techniques, Biodegradation, Environmental, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, DNA, Ribosomal Spacer/analysis, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Germany, Molecular Sequence Data, Mycobacterium/*classification/genetics/*isolation & purification/metabolism, Mycolic Acids/analysis/isolation & purification, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyEnzymology
Phylogeny34878372Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species.Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu JInt J Syst Evol Microbiol10.1099/ijsem.0.0050192021Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Feces/microbiology, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TibetTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11920Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44605)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44605
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36343Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6243
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)