Strain identifier
BacDive ID: 8535
Type strain:
Species: Mycobacterium pyrenivorans
Strain Designation: 17A3, ID 705-01
Strain history: NRRL B-24349 <-- DSM 44605 <-- I. Schuphan 17A3.
NCBI tax ID(s): 1305860 (strain), 187102 (species)
General
@ref: 11920
BacDive-ID: 8535
DSM-Number: 44605
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium pyrenivorans 17A3 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1305860 | strain |
187102 | species |
strain history
doi: 10.13145/bacdive8535.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium pyrenivorans
- full scientific name: Mycobacterium pyrenivorans Derz et al. 2004
synonyms
- @ref: 20215
- synonym: Mycolicibacterium pyrenivorans
@ref: 11920
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium pyrenivorans
full scientific name: Mycobacterium pyrenivorans Derz et al. 2004
strain designation: 17A3, ID 705-01
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 89.695
multimedia
- @ref: 11920
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44605.jpg
- caption: Medium 645 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11920 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
36343 | MEDIUM 93 - for Mycobacterium avium subsp. sylvaticum | yes | Distilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11920 | positive | growth | 28 | mesophilic |
36343 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.462
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 78.976
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
11920 | soil | Übach-Palenberg | Germany | DEU | Europe |
67770 | Contaminated soil of a former coking plant | Übach-Palenberg | Germany | DEU | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 11920
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycobacterium pyrenivorans strain DSM 44605 16S ribosomal RNA gene, partial sequence | DQ124113 | 536 | ena | 187102 |
11920 | Mycobacterium sp. DSM 44605 16S rRNA gene, strain DSM 44605 | AJ431371 | 1481 | ena | 187102 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacterium pyrenivorans JCM 15927 JCM 15927 | GCA_001314105 | contig | ncbi | 1305860 |
66792 | Mycolicibacterium pyrenivorans JCM 15927 | 1305860.4 | wgs | patric | 1305860 |
66792 | Mycolicibacterium pyrenivorans JCM 15927 | 2734481971 | draft | img | 1305860 |
66792 | Mycobacterium pyrenivorans DSM 44605 | GCA_025821625 | scaffold | ncbi | 187102 |
66792 | Streptococcus agalactiae BE-PW-162 | GCA_001694615 | contig | patric | 1311 |
External links
@ref: 11920
culture collection no.: DSM 44605, CIP 108596, NRRL B-24349, JCM 15927
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/295691 |
20218 | http://www.straininfo.net/strains/534375 |
20218 | http://www.straininfo.net/strains/382788 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15545477 | Mycobacterium pyrenivorans sp. nov., a novel polycyclic-aromatic-hydrocarbon-degrading species. | Derz K, Klinner U, Schuphan I, Stackebrandt E, Kroppenstedt RM | Int J Syst Evol Microbiol | 10.1099/ijs.0.03003-0 | 2004 | Bacterial Typing Techniques, Biodegradation, Environmental, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, DNA, Ribosomal Spacer/analysis, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Germany, Molecular Sequence Data, Mycobacterium/*classification/genetics/*isolation & purification/metabolism, Mycolic Acids/analysis/isolation & purification, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Enzymology |
Phylogeny | 34878372 | Mycolicibacterium baixiangningiae sp. nov. and Mycolicibacterium mengxianglii sp. nov., two new rapidly growing mycobacterial species. | Cheng Y, Lei W, Wang X, Tian Z, Liu H, Yang J, Lu S, Lai XH, Pu J, Huang Y, Zhang S, Yang C, Lian X, Bai Y, Wan K, Wang S, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005019 | 2021 | Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Feces/microbiology, Mycobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11920 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44605) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44605 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
36343 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6243 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |