Strain identifier
BacDive ID: 8525
Type strain:
Species: Mycobacterium immunogenum
Strain Designation: BH 29, MC 779
Strain history: CIP 106684 <-- V. Vincent <-- R. J. Wallace MC 779 (=BH29) <-- Barnen's Hosp., Saint-Louis, MO, USA.
NCBI tax ID(s): 83262 (species)
General
@ref: 17738
BacDive-ID: 8525
DSM-Number: 45595
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium immunogenum BH 29 is a mesophilic bacterium that was isolated from BAL fluid.
NCBI tax id
- NCBI tax id: 83262
- Matching level: species
strain history
@ref | history |
---|---|
17738 | <- R. Wallace, University of Texas Health Science Center, Dept. of Microbiology and Immunology; MC 779 |
67770 | CIP 106684 <-- V. Vincent <-- R. J. Wallace MC 779 (=BH29) <-- Barnen's Hosp., Saint-Louis, MO, USA. |
doi: 10.13145/bacdive8525.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium immunogenum
- full scientific name: Mycobacterium immunogenum Wilson et al. 2001
synonyms
- @ref: 20215
- synonym: Mycobacteroides immunogenum
@ref: 17738
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium immunogenum
full scientific name: Mycobacterium immunogenum Wilson et al. 2001 emend. Nouioui et al. 2018
strain designation: BH 29, MC 779
type strain: yes
Morphology
multimedia
- @ref: 17738
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45595.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
17738 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
120057 | CIP Medium 55 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
67770 | positive | growth | 30 | mesophilic |
17738 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
17738 | BAL fluid | Missouri, St. Louis | USA | USA | North America | 38.627 | -90.1994 |
67770 | Bronchoalveolar lavage fluid | MO | USA | USA | North America |
isolation source categories
Cat1 | Cat2 |
---|---|
#Infection | #Patient |
#Host Body Product | #Fluids |
taxonmaps
- @ref: 69479
- File name: preview.99_54.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
- Last taxonomy: Mycobacteroides
- 16S sequence: HE654001
- Sequence Identity:
- Total samples: 21994
- soil counts: 7046
- aquatic counts: 6199
- animal counts: 7007
- plant counts: 1742
Safety information
risk assessment
- @ref: 17738
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycobacterium immunogenum ATCC 700506 16S ribosomal RNA gene and 16S-23S internal transcribed spacer, partial sequence | AY497531 | 263 | ena | 83262 |
20218 | Mycobacterium immunogenum 16S ribosomal RNA gene, partial sequence | AY438071 | 540 | ena | 83262 |
20218 | Mycobacterium immunogenum strain CIP 106684 16S ribosomal RNA gene, partial sequence | AY457080 | 1482 | ena | 83262 |
20218 | Mycobacterium immunogenum 16S-23S ribosomal RNA intergenic spacer, partial sequence | AY593977 | 267 | ena | 83262 |
20218 | Mycobacterium immunogenum partial 16S rRNA gene, type strain DSM 45595T | HE654001 | 1512 | ena | 83262 |
20218 | Mycobacterium immunogen 16S rRNA gene, partial | AJ011771 | 1411 | ena | 83262 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacterium immunogenum strain ATCC 700505 | 83262.34 | wgs | patric | 83262 |
66792 | Mycobacterium immunogenum strain MC 779 | 83262.33 | wgs | patric | 83262 |
67770 | Mycobacteroides immunogenum CCUG 47286 | GCA_001605725 | complete | ncbi | 83262 |
67770 | Mycobacteroides immunogenum ATCC 700505 | GCA_002101665 | contig | ncbi | 83262 |
66792 | Mycobacteroides immunogenum DSM 45595 | GCA_025822945 | scaffold | ncbi | 83262 |
GC content
- @ref: 67770
- GC-content: 64.3
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 95.56 | no |
flagellated | no | 98.525 | no |
gram-positive | yes | 88.777 | no |
anaerobic | no | 99.472 | no |
halophile | no | 93.523 | no |
spore-forming | no | 84.681 | no |
glucose-util | yes | 82.448 | no |
aerobic | yes | 91.325 | no |
thermophile | no | 99.452 | yes |
glucose-ferment | no | 92.516 | no |
External links
@ref: 17738
culture collection no.: DSM 45595, ATCC 700505, JCM 12691, CCUG 47286, CIP 106684, DSM 44764
straininfo link
- @ref: 77913
- straininfo: 43966
literature
- topic: Genetics
- Pubmed-ID: 27231356
- title: Complete Genome Sequence of the Mycobacterium immunogenum Type Strain CCUG 47286.
- authors: Jaen-Luchoro D, Segui C, Aliaga-Lozano F, Salva-Serra F, Busquets A, Gomila M, Ramirez A, Ruiz M, Moore ER, Lalucat J, Bennasar-Figueras A
- journal: Genome Announc
- DOI: 10.1128/genomeA.00401-16
- year: 2016
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17738 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45595) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45595 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
77913 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43966.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120057 | Curators of the CIP | Collection of Institut Pasteur (CIP 106684) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106684 |