Strain identifier

BacDive ID: 8525

Type strain: Yes

Species: Mycobacterium immunogenum

Strain Designation: BH 29, MC 779

Strain history: CIP 106684 <-- V. Vincent <-- R. J. Wallace MC 779 (=BH29) <-- Barnen's Hosp., Saint-Louis, MO, USA.

NCBI tax ID(s): 83262 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 17738

BacDive-ID: 8525

DSM-Number: 45595

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium immunogenum BH 29 is a mesophilic bacterium that was isolated from BAL fluid.

NCBI tax id

  • NCBI tax id: 83262
  • Matching level: species

strain history

@refhistory
17738<- R. Wallace, University of Texas Health Science Center, Dept. of Microbiology and Immunology; MC 779
67770CIP 106684 <-- V. Vincent <-- R. J. Wallace MC 779 (=BH29) <-- Barnen's Hosp., Saint-Louis, MO, USA.

doi: 10.13145/bacdive8525.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium immunogenum
  • full scientific name: Mycobacterium immunogenum Wilson et al. 2001
  • synonyms

    • @ref: 20215
    • synonym: Mycobacteroides immunogenum

@ref: 17738

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium immunogenum

full scientific name: Mycobacterium immunogenum Wilson et al. 2001 emend. Nouioui et al. 2018

strain designation: BH 29, MC 779

type strain: yes

Morphology

multimedia

  • @ref: 17738
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45595.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17738MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
120057CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
17738positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
17738BAL fluidMissouri, St. LouisUSAUSANorth America38.627-90.1994
67770Bronchoalveolar lavage fluidMOUSAUSANorth America

isolation source categories

Cat1Cat2
#Infection#Patient
#Host Body Product#Fluids

taxonmaps

  • @ref: 69479
  • File name: preview.99_54.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
  • Last taxonomy: Mycobacteroides
  • 16S sequence: HE654001
  • Sequence Identity:
  • Total samples: 21994
  • soil counts: 7046
  • aquatic counts: 6199
  • animal counts: 7007
  • plant counts: 1742

Safety information

risk assessment

  • @ref: 17738
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium immunogenum ATCC 700506 16S ribosomal RNA gene and 16S-23S internal transcribed spacer, partial sequenceAY497531263ena83262
20218Mycobacterium immunogenum 16S ribosomal RNA gene, partial sequenceAY438071540ena83262
20218Mycobacterium immunogenum strain CIP 106684 16S ribosomal RNA gene, partial sequenceAY4570801482ena83262
20218Mycobacterium immunogenum 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY593977267ena83262
20218Mycobacterium immunogenum partial 16S rRNA gene, type strain DSM 45595THE6540011512ena83262
20218Mycobacterium immunogen 16S rRNA gene, partialAJ0117711411ena83262

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium immunogenum strain ATCC 70050583262.34wgspatric83262
66792Mycobacterium immunogenum strain MC 77983262.33wgspatric83262
67770Mycobacteroides immunogenum CCUG 47286GCA_001605725completencbi83262
67770Mycobacteroides immunogenum ATCC 700505GCA_002101665contigncbi83262
66792Mycobacteroides immunogenum DSM 45595GCA_025822945scaffoldncbi83262

GC content

  • @ref: 67770
  • GC-content: 64.3
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno95.56no
flagellatedno98.525no
gram-positiveyes88.777no
anaerobicno99.472no
halophileno93.523no
spore-formingno84.681no
glucose-utilyes82.448no
aerobicyes91.325no
thermophileno99.452yes
glucose-fermentno92.516no

External links

@ref: 17738

culture collection no.: DSM 45595, ATCC 700505, JCM 12691, CCUG 47286, CIP 106684, DSM 44764

straininfo link

  • @ref: 77913
  • straininfo: 43966

literature

  • topic: Genetics
  • Pubmed-ID: 27231356
  • title: Complete Genome Sequence of the Mycobacterium immunogenum Type Strain CCUG 47286.
  • authors: Jaen-Luchoro D, Segui C, Aliaga-Lozano F, Salva-Serra F, Busquets A, Gomila M, Ramirez A, Ruiz M, Moore ER, Lalucat J, Bennasar-Figueras A
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00401-16
  • year: 2016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17738Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45595)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45595
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77913Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43966.1StrainInfo: A central database for resolving microbial strain identifiers
120057Curators of the CIPCollection of Institut Pasteur (CIP 106684)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106684