Strain identifier

BacDive ID: 8521

Type strain: Yes

Species: Mycobacterium brisbanense

Strain Designation: MF-614, W6743

Strain history: CIP <- 2003, G. Goolsby, CDC, Atlanta, Georgia, USA: strain W6743 <- R.J. Wallace <- J.M. Blacklock

NCBI tax ID(s): 146020 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11995

BacDive-ID: 8521

DSM-Number: 44680

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Mycobacterium brisbanense MF-614 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from antral sinus.

NCBI tax id

  • NCBI tax id: 146020
  • Matching level: species

strain history

@refhistory
11995<- J. M. Brown, CDC; W6743 <- R. J. Wallace <- Z. M. Blacklock
67770CIP 107830 <-- G. Goolsby W6743 <-- R. J. Wallace Mf-614 <-- J. M. Blacklock.
117046CIP <- 2003, G. Goolsby, CDC, Atlanta, Georgia, USA: strain W6743 <- R.J. Wallace <- J.M. Blacklock

doi: 10.13145/bacdive8521.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium brisbanense
  • full scientific name: Mycobacterium brisbanense Schinsky et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium brisbanense

@ref: 11995

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium brisbanense

full scientific name: Mycobacterium brisbanense Schinsky et al. 2004

strain designation: MF-614, W6743

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidencecell shape
29958positive
69480no92.515
69480positive100
117046norod-shaped

colony morphology

  • @ref: 57767
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11995MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
36376MEDIUM 55 - for Mycobacteriumyes
117046CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
117046CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
11995positivegrowth37mesophilic
29958positivegrowth28-35mesophilic
29958positiveoptimum31.5mesophilic
36376positivegrowth37mesophilic
57767positivegrowth37-42
67770positivegrowth37mesophilic
117046positivegrowth10-30
117046nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57767
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29958no
69481no99
69480no99.257

halophily

  • @ref: 29958
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2995815963ribitol+carbon source
2995822599arabinose+carbon source
2995828757fructose+carbon source
2995817234glucose+carbon source
2995829864mannitol+carbon source
2995837684mannose+carbon source
2995817268myo-inositol+carbon source
2995817814salicin+carbon source
2995830911sorbitol+carbon source
2995827082trehalose+carbon source
2995817632nitrate+reduction
117046606565hippurate+hydrolysis
11704617632nitrate-reduction
11704616301nitrite-reduction

antibiotic resistance

  • @ref: 117046
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 117046
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29958arylsulfatase+3.1.6.1
29958catalase+1.11.1.6
29958urease+3.5.1.5
117046oxidase-
117046beta-galactosidase-3.2.1.23
117046gelatinase-
117046amylase-
117046DNase+
117046caseinase-3.4.21.50
117046catalase+1.11.1.6
117046tween esterase+
117046gamma-glutamyltransferase+2.3.2.2
117046lecithinase-
117046lipase-
117046protease-
117046urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117046--++-+----+-----+---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117046++-+-+-------------+---+--+++--+++--++--+--------+------+--++-+-+--+--++++++-+--+--++-+-+-+++++-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11995antral sinusBrisbaneAustraliaAUSAustralia and Oceania
57767Antral sinusBrisbaneAustraliaAUSAustralia and Oceania
67770Antral sinusBrisbaneAustraliaAUSAustralia and Oceania
117046Antral sinusAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Oral cavity and airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_1906.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_115;97_219;98_248;99_1906&stattab=map
  • Last taxonomy: Mycolicibacterium
  • 16S sequence: AY012577
  • Sequence Identity:
  • Total samples: 640
  • soil counts: 361
  • aquatic counts: 128
  • animal counts: 69
  • plant counts: 82

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
119952Risk group (German classification)
1170461Risk group (French classification)

Sequence information

16S sequences

  • @ref: 11995
  • description: Mycobacterium brisbanense strain W6743 16S ribosomal RNA gene, partial sequence
  • accession: AY012577
  • length: 1499
  • database: ena
  • NCBI tax ID: 146020

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium brisbanense strain JCM15654146020.3wgspatric146020
67770Mycolicibacterium brisbanense JCM15654GCA_001570425scaffoldncbi146020
66792Mycolicibacterium brisbanense DSM 44680GCA_025822265scaffoldncbi146020

GC content

@refGC-contentmethod
2995862
6777062thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno92.743no
gram-positiveyes87.716yes
anaerobicno98.813yes
halophileno95.856no
spore-formingno82.875no
thermophileno99.575yes
glucose-utilyes89.192yes
aerobicyes90.968yes
flagellatedno97.592no
glucose-fermentno90.983no

External links

@ref: 11995

culture collection no.: DSM 44680, ATCC 49938, CCUG 47584, CIP 107830, JCM 15654

straininfo link

  • @ref: 77910
  • straininfo: 42765

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388725Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates.Schinsky MF, Morey RE, Steigerwalt AG, Douglas MP, Wilson RW, Floyd MM, Butler WR, Daneshvar MI, Brown-Elliott BA, Wallace RJ, McNeil MM, Brenner DJ, Brown JMInt J Syst Evol Microbiol10.1099/ijs.0.02743-02004Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Genes, rRNA/genetics, Humans, Microbial Sensitivity Tests, Molecular Sequence Data, Mycobacterium Infections, Nontuberculous/*microbiology, Mycobacterium fortuitum/*classification/genetics/isolation & purification/physiology, Mycolic Acids/analysis, Nontuberculous Mycobacteria/*classification/genetics/isolation & purification/physiology, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNAEnzymology
Phylogeny24687707Mycobacterium brisbanense species nova isolated from a patient with chronic cavitary lung infection.Poh ME, Liam CK, Ng KP, Tan RChest10.1378/chest.13-19522014Chronic Disease, Humans, Male, Middle Aged, Mycobacterium Infections, Nontuberculous/*microbiology, Nontuberculous Mycobacteria/*isolation & purification, Pneumonia, Bacterial/*microbiologyPathogenicity

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
11995Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44680)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44680
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29958Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2632728776041
36376Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5385
57767Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47584)https://www.ccug.se/strain?id=47584
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77910Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42765.1StrainInfo: A central database for resolving microbial strain identifiers
117046Curators of the CIPCollection of Institut Pasteur (CIP 107830)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107830