Strain identifier

BacDive ID: 8513

Type strain: Yes

Species: Mycobacterium haemophilum

Strain Designation: 1, 141420001

Strain history: NCTC 11185 <-- D. Sompolinsky strain 1.

NCBI tax ID(s): 1202450 (strain), 29311 (species)

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General

@ref: 11943

BacDive-ID: 8513

DSM-Number: 44634

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Mycobacterium haemophilum 1 is an aerobe, mesophilic human pathogen that was isolated from subcutaneous granuloma.

NCBI tax id

NCBI tax idMatching level
29311species
1202450strain

strain history

@refhistory
11943<- CIP; CIP 105049 <- V. Vincent, Inst. Pasteur; 141420001 <- ATCC; ATCC 29548 <- D. Sompolinsky; 1
67770NCTC 11185 <-- D. Sompolinsky strain 1.

doi: 10.13145/bacdive8513.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium haemophilum
  • full scientific name: Mycobacterium haemophilum Sompolinsky et al. 1978 (Approved Lists 1980)

@ref: 11943

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium haemophilum

full scientific name: Mycobacterium haemophilum Sompolinsky et al. 1978 emend. Nouioui et al. 2018

strain designation: 1, 141420001

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no91
12543995.7positive

colony morphology

  • @ref: 57697
  • incubation period: 17 days

multimedia

  • @ref: 11943
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44634.jpg
  • caption: Medium 645a 30°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11943HEMIN MEDIUM FOR MYCOBACTERIUM (DSMZ Medium 645a)yeshttps://mediadive.dsmz.de/medium/645aName: HEMIN MEDIUM FOR MYCOBACTERIUM (DSMZ Medium 645a) Composition: Haemin OADC Enrichment Middlebrook 7H10 agar
11943COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperature
11943positivegrowth30
57697positivegrowth30
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
57697aerobe
125439obligate aerobe98.4

Isolation, sampling and environmental information

isolation

@refsample type
11943subcutaneous granuloma
57697Subcutaneous granuloma
67770Subcutaneous granuloma

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host Body-Site#Organ#Skin, Nail, Hair

Safety information

risk assessment

  • @ref: 11943
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium haemophilum strain CIP 105049 16S ribosomal RNA gene, partial sequenceAF547932555nuccore1202450
20218Mycobacterium haemophilum partial 16S rRNA gene, strain DSM 44634HE8622321526nuccore1202450

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium haemophilum DSM 44634 ATCC 29548GCA_000340435completencbi1202450
66792Mycobacterium haemophilum DSM 44634 = ATCC 295481202450.10completepatric1202450
66792Mycobacterium haemophilum DSM 44634 ATCC 295482645727719completeimg1202450
66792Mycobacterium haemophilum DSM 44634GCA_025823035scaffoldncbi1202450

GC content

@refGC-contentmethod
6777066thermal denaturation, midpoint method (Tm)
6777063.9genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.4
125439BacteriaNetgram_stainReaction to gram-stainingpositive95.7
125439BacteriaNetmotilityAbility to perform movementno87.5
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes63
125438gram-positivegram-positivePositive reaction to Gram-stainingyes88.498no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.54yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.636no
125438spore-formingspore-formingAbility to form endo- or exosporesno63.879no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.035yes
125438motile2+flagellatedAbility to perform flagellated movementno91no

External links

@ref: 11943

culture collection no.: DSM 44634, ATCC 29548, CCUG 47452, CIP 105049, TMC 804, JCM 15465, NCTC 11185

straininfo link

  • @ref: 77903
  • straininfo: 39585

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11943Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44634)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44634
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57697Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47452)https://www.ccug.se/strain?id=47452
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
77903Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39585.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1