Strain identifier
BacDive ID: 8504
Type strain: 
Species: Mycobacterium frederiksbergense
Strain Designation: Fan9
Variant: Isotype of BacDive ID 8499
Strain history: <- KCTC; KCTC 19100 <- DSMZ <- U. Karlson, Miljo and Engeri, Roskilde Denmark; Fan9
NCBI tax ID(s): 117567 (species)
General
@ref: 16363
BacDive-ID: 8504
DSM-Number: 45364
keywords: genome sequence, Bacteria, mesophilic
description: Mycobacterium frederiksbergense Fan9 is a mesophilic bacterium that was isolated from coaltar contaminated soil, farmer gas works site.
NCBI tax id
- NCBI tax id: 117567
- Matching level: species
strain history
- @ref: 16363
- history: <- KCTC; KCTC 19100 <- DSMZ <- U. Karlson, Miljo and Engeri, Roskilde Denmark; Fan9
doi: 10.13145/bacdive8504.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium frederiksbergense
- full scientific name: Mycobacterium frederiksbergense Willumsen et al. 2001
synonyms
- @ref: 20215
- synonym: Mycolicibacterium frederiksbergense
@ref: 16363
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium frederiksbergense
full scientific name: Mycobacterium frederiksbergense Willumsen et al. 2001
strain designation: Fan9
variant: Isotype of BacDive ID 8499
type strain: no
Morphology
colony morphology
- @ref: 16363
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 16363
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 16363
- growth: positive
- type: growth
- temperature: 28-37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16363
- sample type: coaltar contaminated soil, farmer gas works site
- geographic location: Copenhagen
- country: Denmark
- origin.country: DNK
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Geologic |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 16363
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Mycolicibacterium frederiksbergense DSM 45364
- accession: GCA_025822145
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 117567
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.503 | no |
| flagellated | no | 97.709 | no |
| gram-positive | yes | 89.247 | no |
| anaerobic | no | 99.316 | no |
| aerobic | yes | 90.137 | no |
| halophile | no | 91.882 | no |
| spore-forming | no | 77.783 | no |
| glucose-ferment | no | 90.04 | no |
| glucose-util | yes | 83.719 | no |
| thermophile | no | 99.569 | no |
External links
@ref: 16363
culture collection no.: DSM 45364, JCM 13014, KCTC 19370, KCTC 19100, NRRL B-24126
literature
- topic: Phylogeny
- Pubmed-ID: 11594601
- title: Mycobacterium frederiksbergense sp. nov., a novel polycyclic aromatic hydrocarbon-degrading Mycobacterium species.
- authors: Willumsen P, Karlson U, Stackebrandt E, Kroppenstedt RM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-5-1715
- year: 2001
- mesh: Biodegradation, Environmental, Coal Tar, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Denmark, Fatty Acids/analysis, Molecular Sequence Data, Mycobacterium/chemistry/*classification/metabolism, Mycolic Acids/analysis, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16363 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45364) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45364 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |