Strain identifier

BacDive ID: 85

Type strain: Yes

Species: Komagataeibacter hansenii

Strain history: CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm

NCBI tax ID(s): 436 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2249

BacDive-ID: 85

DSM-Number: 5602

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Komagataeibacter hansenii DSM 5602 is a mesophilic, Gram-negative bacterium that was isolated from vinegar.

NCBI tax id

  • NCBI tax id: 436
  • Matching level: species

strain history

@refhistory
2249<- LMG <- NCIB <- L. Shimwell <- M. Schramm
67770NCIB 8746 <-- J. L. Shimwell strain Mutant 1 <-- M. Schramm.
119836CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm

doi: 10.13145/bacdive85.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter hansenii
  • full scientific name: Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013
  • synonyms

    @refsynonym
    20215Komagatabacter hansenii
    20215Novacetimonas hansenii
    20215Acetobacter hansenii
    20215Gluconoacetobacter hansenii
    20215Gluconacetobacter hansenii

@ref: 2249

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter hansenii

full scientific name: Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013 emend. Škraban et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.993

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40606MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
2249GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yesName: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/105
2249YPM MEDIUM (DSMZ Medium 360)yesName: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/360
119836CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
40606positivegrowth30mesophilic
2249positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

observation

  • @ref: 67770
  • observation: quinones: Q-10

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2249vinegarJerusalemIsraelISRAsia
46758Mutant derived from vinegar isolate NCIB 8745JerusalemIsraelISRAsia
67770Local vinegar breweryIsraelISRAsia
119836Food, Local vinegar brewIsraelISRAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Food production#Food
#Condition#Acidic

taxonmaps

  • @ref: 69479
  • File name: preview.99_1535.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_1535&stattab=map
  • Last taxonomy: Komagataeibacter
  • 16S sequence: X75620
  • Sequence Identity:
  • Total samples: 810
  • soil counts: 119
  • aquatic counts: 106
  • animal counts: 397
  • plant counts: 188

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
22491Risk group (German classification)
1198361Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820AB1667361427ena436
20218Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820AB6806751414ena436
20218Gluconacetobacter hansenii strain LMG 1527 16S ribosomal RNA gene, partial sequenceJF7939861352ena436
20218Gluconacetobacter hansenii strain DSM 5602 16S ribosomal RNA gene, partial sequenceJF7939871352ena436
2249Gluconacetobacter hansenii gene for 16S ribosomal RNAX756201481ena436

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Novacetimonas hansenii JCM 7643GCA_000964405scaffoldncbi1231352
66792Komagataeibacter hansenii JCM 76431231352.3wgspatric1231352
66792Komagataeibacter hansenii strain NBRC 14820436.18wgspatric436
67770Novacetimonas hansenii NBRC 14820GCA_006539705contigncbi436

GC content

  • @ref: 67770
  • GC-content: 59.7
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno81.329no
flagellatedno95.182no
gram-positiveno96.65no
anaerobicno98.24no
aerobicyes82.868no
halophileno90.533no
spore-formingno94.035no
thermophileno94.962yes
glucose-utilyes84.946no
glucose-fermentno88.922no

External links

@ref: 2249

culture collection no.: DSM 5602, ATCC 35959, BCC 6318, CCUG 18123, LMG 1527, NBRC 14820, NCIMB 8746, JCM 7643, BCRC 14157, CGMCC 1.1811, CIP 103110, IFO 14820, VTT E-97829

straininfo link

  • @ref: 69768
  • straininfo: 14555

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
12501359Taxonomic heterogeneity of strains comprising Gluconacetobacter hansenii.Navarro RR, Uchimura T, Komagata KJ Gen Appl Microbiol10.2323/jgam.45.2951999
17267978Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea.Dutta D, Gachhui RInt J Syst Evol Microbiol10.1099/ijs.0.64638-02007PhylogenyAmino Acids/metabolism, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cellulose/biosynthesis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Food Microbiology, Genes, rRNA, Gluconacetobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Tea/*microbiologyMetabolism
27678116Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha.Semjonovs P, Ruklisha M, Paegle L, Saka M, Treimane R, Skute M, Rozenberga L, Vikele L, Sabovics M, Cleenwerck IAppl Microbiol Biotechnol10.1007/s00253-016-7761-82016MetabolismAmplified Fragment Length Polymorphism Analysis, Carbon/metabolism, Cellulose/*biosynthesis/metabolism, Culture Media/chemistry, *Fermentation, Gluconacetobacter/classification/growth & development/isolation & purification/*metabolism, Glucose/metabolism, Kombucha Tea/*microbiologyPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5602)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5602
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40606Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14872
46758Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 18123)https://www.ccug.se/strain?id=18123
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69768Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14555.1StrainInfo: A central database for resolving microbial strain identifiers
119836Curators of the CIPCollection of Institut Pasteur (CIP 103110)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103110