Strain identifier
BacDive ID: 85
Type strain: 
Species: Gluconacetobacter hansenii
Strain history: CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm
NCBI tax ID(s): 1231352 (strain), 436 (species)
version 9.3 (current version)
General
@ref: 2249
BacDive-ID: 85
DSM-Number: 5602
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Gluconacetobacter hansenii DSM 5602 is a mesophilic, Gram-negative bacterium that was isolated from vinegar.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 436 | species |
| 1231352 | strain |
strain history
| @ref | history |
|---|---|
| 2249 | <- LMG <- NCIB <- L. Shimwell <- M. Schramm |
| 67770 | NCIB 8746 <-- J. L. Shimwell strain Mutant 1 <-- M. Schramm. |
| 119836 | CIP <- 1988, NCIB <- 1956, J.L. Shimwell <- M. Schramm |
doi: 10.13145/bacdive85.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Gluconacetobacter
- species: Gluconacetobacter hansenii
- full scientific name: Gluconacetobacter hansenii corrig. (Gosselé et al. 1983) Yamada et al. 1998
synonyms
@ref synonym 20215 Gluconoacetobacter hansenii 20215 Komagataeibacter hansenii 20215 Novacetimonas hansenii 20215 Komagatabacter hansenii 20215 Acetobacter hansenii
@ref: 2249
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter hansenii
full scientific name: Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013 emend. Škraban et al. 2018
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 98.8 |
| 125438 | negative | 95.771 |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 40606 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |
| 2249 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | yes | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water | https://mediadive.dsmz.de/medium/105 |
| 2249 | YPM MEDIUM (DSMZ Medium 360) | yes | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/360 |
| 119836 | CIP Medium 1 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 40606 | positive | growth | 30 |
| 2249 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate anaerobe
- confidence: 95.6
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.6
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2249 | vinegar | Jerusalem | Israel | ISR | Asia |
| 46758 | Mutant derived from vinegar isolate NCIB 8745 | Jerusalem | Israel | ISR | Asia |
| 67770 | Local vinegar brewery | Israel | ISR | Asia | |
| 119836 | Food, Local vinegar brew | Israel | ISR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Engineered | #Food production | #Food |
| #Condition | #Acidic |
taxonmaps
- @ref: 69479
- File name: preview.99_1535.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_1535&stattab=map
- Last taxonomy: Komagataeibacter
- 16S sequence: X75620
- Sequence Identity:
- Total samples: 810
- soil counts: 119
- aquatic counts: 106
- animal counts: 397
- plant counts: 188
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 2249 | 1 | Risk group (German classification) |
| 119836 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820 | AB166736 | 1427 | nuccore | 436 |
| 20218 | Gluconacetobacter hansenii gene for 16S rRNA, partial sequence, strain: NBRC 14820 | AB680675 | 1414 | nuccore | 436 |
| 20218 | Gluconacetobacter hansenii strain LMG 1527 16S ribosomal RNA gene, partial sequence | JF793986 | 1352 | nuccore | 436 |
| 20218 | Gluconacetobacter hansenii strain DSM 5602 16S ribosomal RNA gene, partial sequence | JF793987 | 1352 | nuccore | 436 |
| 2249 | Gluconacetobacter hansenii gene for 16S ribosomal RNA | X75620 | 1481 | nuccore | 436 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Novacetimonas hansenii JCM 7643 | GCA_000964405 | scaffold | ncbi | 1231352 |
| 66792 | Komagataeibacter hansenii JCM 7643 | 1231352.3 | wgs | patric | 1231352 |
| 66792 | Komagataeibacter hansenii strain NBRC 14820 | 436.18 | wgs | patric | 436 |
| 67770 | Novacetimonas hansenii NBRC 14820 | GCA_006539705 | contig | ncbi | 436 |
GC content
- @ref: 67770
- GC-content: 59.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.771 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.963 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.405 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.555 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.26 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 60.002 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 77.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 95.6 |
External links
@ref: 2249
culture collection no.: DSM 5602, ATCC 35959, BCC 6318, CCUG 18123, LMG 1527, NBRC 14820, NCIMB 8746, JCM 7643, BCRC 14157, CGMCC 1.1811, CIP 103110, IFO 14820, VTT E-97829
straininfo link
- @ref: 69768
- straininfo: 14555
literature
| Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| 12501359 | Taxonomic heterogeneity of strains comprising Gluconacetobacter hansenii. | Navarro RR, Uchimura T, Komagata K | J Gen Appl Microbiol | 10.2323/jgam.45.295 | 1999 | |||
| 17267978 | Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea. | Dutta D, Gachhui R | Int J Syst Evol Microbiol | 10.1099/ijs.0.64638-0 | 2007 | Phylogeny | Amino Acids/metabolism, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cellulose/biosynthesis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Food Microbiology, Genes, rRNA, Gluconacetobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Tea/*microbiology | Metabolism |
| 27678116 | Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha. | Semjonovs P, Ruklisha M, Paegle L, Saka M, Treimane R, Skute M, Rozenberga L, Vikele L, Sabovics M, Cleenwerck I | Appl Microbiol Biotechnol | 10.1007/s00253-016-7761-8 | 2016 | Metabolism | Amplified Fragment Length Polymorphism Analysis, Carbon/metabolism, Cellulose/*biosynthesis/metabolism, Culture Media/chemistry, *Fermentation, Gluconacetobacter/classification/growth & development/isolation & purification/*metabolism, Glucose/metabolism, Kombucha Tea/*microbiology | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2249 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5602) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5602 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 40606 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14872 | ||||
| 46758 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 18123) | https://www.ccug.se/strain?id=18123 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69768 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14555.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 119836 | Curators of the CIP | Collection of Institut Pasteur (CIP 103110) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103110 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |