Strain identifier

BacDive ID: 8477

Type strain: Yes

Species: Mycobacterium tusciae

Strain Designation: Fi-25796, ID 3930

Strain history: CIP <- 2000, E. Tortoli, Florence, Italy: strain FI-25796 <- Inst. Hyg., Pisa, Italy

NCBI tax ID(s): 75922 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11684

BacDive-ID: 8477

DSM-Number: 44338

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, rod-shaped

description: Mycobacterium tusciae Fi-25796 is a mesophilic, rod-shaped bacterium that was isolated from cervical lymph node of a child.

NCBI tax id

  • NCBI tax id: 75922
  • Matching level: species

strain history

@refhistory
11684<- E. Tortoli, Coreggi Hospital, Fi-25796 <- Hygiene Inst. Pisa
67770CIP 106367 <-- E. Tortoli FI-25796 <-- Inst. Hyg., Pisa, Italy.
123700CIP <- 2000, E. Tortoli, Florence, Italy: strain FI-25796 <- Inst. Hyg., Pisa, Italy

doi: 10.13145/bacdive8477.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium tusciae
  • full scientific name: Mycobacterium tusciae Tortoli et al. 1999
  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium tusciae

@ref: 11684

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium tusciae

full scientific name: Mycobacterium tusciae Tortoli et al. 1999

strain designation: Fi-25796, ID 3930

type strain: yes

Morphology

cell morphology

  • @ref: 123700
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11684LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)yeshttps://mediadive.dsmz.de/medium/354Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water
11684MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
36250MEDIUM 55 - for Mycobacteriumyes
123700CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
11684positivegrowth37mesophilic
36250positivegrowth30mesophilic
67770positivegrowth28mesophilic
123700positivegrowth22-37
123700nogrowth10psychrophilic
123700nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
123700606565hippurate-hydrolysis
12370017632nitrate+reduction
12370016301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12370035581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123700oxidase-
123700beta-galactosidase-3.2.1.23
123700gelatinase-
123700catalase+1.11.1.6
123700gamma-glutamyltransferase-2.3.2.2
123700urease-3.5.1.5
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
11684--+/-+-+--------------
123700-+++-+-+--++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
11684+---------+/-+/---+-+/-+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
11684cervical lymph node of a childPisaItalyITAEurope
59084Human lymph nodePisaItalyITAEurope1996
67770Cervical lymph node of a child
123700Human, Cervical lymphonode (child)PisaItalyITAEurope1995

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body-Site#Organ#Lymph node
#Host#Human#Child

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
116841Risk group (German classification)
1237001Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium tusciae strain CIP 106367 16S ribosomal RNA gene, partial sequenceAF547978543ena75922
20218Mycobacterium tusciae 16S ribosomal RNA gene, partial sequenceHM7708641472ena75922
11684Mycobacterium sp. FI-25796 16S ribosomal RNA gene, complete sequenceAF0582991409ena75922

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium tusciae DSM 443382865601517draftimg75922
67770Mycolicibacterium tusciae DSM 44338GCA_002086795contigncbi75922

GC content

@refGC-contentmethod
1168466.4
6777066.4high performance liquid chromatography (HPLC)

External links

@ref: 11684

culture collection no.: CCUG 50996, CIP 106367, JCM 12692, DSM 44338, ATCC BAA 564

straininfo link

  • @ref: 77872
  • straininfo: 50578

literature

  • topic: Phylogeny
  • Pubmed-ID: 10555367
  • title: Mycobacterium tusciae sp. nov.
  • authors: Tortoli E, Kroppenstedt RM, Bartoloni A, Caroli G, Jan I, Pawlowski J, Emler S
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-4-1839
  • year: 1999
  • mesh: Bacterial Typing Techniques, Base Composition, Base Sequence, Child, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fibrosis/microbiology, Humans, Immunocompromised Host, Lipids/analysis, Lymph Nodes/microbiology, Molecular Sequence Data, Mycobacterium/chemistry/*classification/isolation & purification/physiology, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water Microbiology, Water Supply
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11684Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44338)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44338
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36250Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18490
59084Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50996)https://www.ccug.se/strain?id=50996
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
77872Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50578.1StrainInfo: A central database for resolving microbial strain identifiers
123700Curators of the CIPCollection of Institut Pasteur (CIP 106367)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106367