Strain identifier
BacDive ID: 8461
Type strain:
Species: Mycobacterium conspicuum
Strain Designation: 3895/92
Strain history: CIP <- 1997, DSMZ <- E.C. Böttger: strain 3895/92
NCBI tax ID(s): 44010 (species)
General
@ref: 11516
BacDive-ID: 8461
DSM-Number: 44136
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Mycobacterium conspicuum 3895/92 is a microaerophile, mesophilic bacterium that was isolated from patients with disseminated infection.
NCBI tax id
- NCBI tax id: 44010
- Matching level: species
strain history
@ref | history |
---|---|
11516 | <- E. C. Böttger, 3895/92 (E27; E100) |
67770 | CIP 105165 <-- DSM 44136 <-- E. C. Böttger 3895/92. |
118733 | CIP <- 1997, DSMZ <- E.C. Böttger: strain 3895/92 |
doi: 10.13145/bacdive8461.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium conspicuum
- full scientific name: Mycobacterium conspicuum Springer et al. 1996
@ref: 11516
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium conspicuum
full scientific name: Mycobacterium conspicuum Springer et al. 1996 emend. Nouioui et al. 2018
strain designation: 3895/92
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 93.596 | ||
69480 | 100 | positive | ||
118733 | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11516 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
11516 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
36350 | MEDIUM 55 - for Mycobacterium | yes | ||
118733 | CIP Medium 55 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11516 | positive | growth | 37 | mesophilic |
36350 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
118733 | positive | growth | 22-30 | |
118733 | no | growth | 10 | psychrophilic |
118733 | no | growth | 15 | psychrophilic |
118733 | no | growth | 37 | mesophilic |
118733 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 118733
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.897
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
118733 | 17632 | nitrate | - | reduction |
118733 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 118733
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
118733 | oxidase | - | |
118733 | beta-galactosidase | + | 3.2.1.23 |
118733 | gelatinase | - | |
118733 | catalase | + | 1.11.1.6 |
118733 | gamma-glutamyltransferase | - | 2.3.2.2 |
118733 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
11516 | patients with disseminated infection |
53710 | Human with disseminated infection |
67770 | Blood of a patient with disseminated infection |
118733 | Human, Disseminated infection |
isolation source categories
Cat1 | Cat2 |
---|---|
#Infection | #Disease |
#Infection | #Patient |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11516 | 2 | Risk group (German classification) |
118733 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | M.conspicuum 16S rRNA gene | X88922 | 1433 | ena | 44010 |
20218 | Mycobacterium conspicuum strain CIP 105165 16S ribosomal RNA gene, partial sequence | AF547914 | 554 | ena | 44010 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycobacterium conspicuum JCM 14738 | GCA_010730195 | complete | ncbi | 44010 |
66792 | Mycobacterium conspicuum strain DSM 44136 | 44010.3 | wgs | patric | 44010 |
66792 | Mycobacterium conspicuum strain JCM 14738 | 44010.9 | complete | patric | 44010 |
66792 | Mycobacterium conspicuum DSM 44136 | 2865357517 | draft | img | 44010 |
67770 | Mycobacterium conspicuum DSM 44136 | GCA_002102095 | contig | ncbi | 44010 |
66792 | Mycobacterium conspicuum DSM 44136 | GCA_025821765 | scaffold | ncbi | 44010 |
GC content
- @ref: 67770
- GC-content: 67.4
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 88 | no |
motile | no | 95.387 | no |
flagellated | no | 98.871 | no |
gram-positive | yes | 90.726 | no |
anaerobic | no | 99.103 | no |
aerobic | yes | 88.458 | no |
halophile | no | 94.436 | no |
spore-forming | no | 85.688 | no |
thermophile | no | 97.509 | yes |
glucose-util | yes | 66.166 | no |
glucose-ferment | no | 91.93 | no |
External links
@ref: 11516
culture collection no.: DSM 44136, ATCC 700090, CIP 105165, CCUG 37516, JCM 14738
straininfo link
- @ref: 77856
- straininfo: 43767
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11516 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44136) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44136 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
36350 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17154 | ||||
53710 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 37516) | https://www.ccug.se/strain?id=37516 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
77856 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43767.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
118733 | Curators of the CIP | Collection of Institut Pasteur (CIP 105165) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105165 |