Strain identifier

BacDive ID: 8447

Type strain: Yes

Species: Mycobacterium fallax

Strain Designation: 141390005

Strain history: CIP <- 1981, V. Lévy-Frébault, Inst. Pasteur, Paris, France: strain 14 139 0005

NCBI tax ID(s): 1793 (species)

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General

@ref: 11577

BacDive-ID: 8447

DSM-Number: 44179

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Mycobacterium fallax 141390005 is an aerobe, mesophilic bacterium that was isolated from water sample.

NCBI tax id

  • NCBI tax id: 1793
  • Matching level: species

strain history

@refhistory
11577<- CIP <- V. Lévy-Frébault, Inst. Pasteur Paris
67770M. Tsukamura 42501 <-- V. Lévy-Frébault.
119273CIP <- 1981, V. Lévy-Frébault, Inst. Pasteur, Paris, France: strain 14 139 0005

doi: 10.13145/bacdive8447.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium fallax
  • full scientific name: Mycobacterium fallax Lévy-Frébault et al. 1983

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium fallax

@ref: 11577

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium fallax

full scientific name: Mycobacterium fallax Lévy-Frébault et al. 1983 emend. Nouioui et al. 2018

strain designation: 141390005

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.934
69480100positive
119273rod-shaped

colony morphology

  • @ref: 53749
  • incubation period: 2 days

multimedia

  • @ref: 11577
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44179.jpg
  • caption: Medium 645 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11577MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11577PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250)yeshttps://mediadive.dsmz.de/medium/250Name: PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) Composition: Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Glycerol Distilled water
41114MEDIUM 55 - for Mycobacteriumyes
119273CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
11577positivegrowth28mesophilic
41114positivegrowth30mesophilic
53749positivegrowth30mesophilic
67770positivegrowth30mesophilic
119273positivegrowth30mesophilic
119273nogrowth10psychrophilic
119273nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53749aerobe
119273obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.936

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11927317632nitrate+reduction
11927316301nitrite-reduction
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53749C12:02.412
    53749C14:013.514
    53749C15:01.515
    53749C16:028.316
    53749C18:01.518
    53749C16:0 2OH0.617.233
    53749C16:1 ω7c415.819
    53749C16:1 ω7c/C15:0 ISO 2OH9.215.85
    53749C16:1 ω9c1.415.774
    53749C17:1 ω8c0.816.792
    53749C18:1 ω9c25.117.769
    53749C18:2 ω6,9c/C18:0 ANTE6.717.724
    53749C20:4 ω6,9,12,15c0.619.395
    53749TBSA 10Me18:03.918.392
    53749Unidentified0.513.765
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYG
11577+-------------------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
11577---+/--+/-----++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11577water sampleSeine riverFranceFRAEurope
53749WaterSeine riverFranceFRAEurope
67770Water from the Seine River
119273Environment, Water sampleFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
115771Risk group (German classification)
1192731Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium fallax 16S ribosomal RNA gene, partial sequenceAF4806001470ena1793
20218M.fallax 16S ribosomal RNAM295621348ena1793
20218Mycobacterium fallax strain CIP 81.39 16S ribosomal RNA gene, partial sequenceAF547920540ena1793

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium fallax JCM 6405GCA_010726955completencbi1793
66792Mycobacterium fallax strain DSM 441791793.3wgspatric1793
66792Mycolicibacterium fallax strain JCM 64051793.10completepatric1793
66792Mycolicibacterium fallax DSM 441792865347724draftimg1793
67770Mycolicibacterium fallax DSM 44179GCA_002101995contigncbi1793
66792Mycolicibacterium fallax DSM 44179GCA_025821465scaffoldncbi1793

GC content

  • @ref: 67770
  • GC-content: 70.3
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno70no
motileno95.286no
flagellatedno98.829no
gram-positiveyes90.04no
anaerobicno98.936no
aerobicyes79.737no
halophileno87.001no
spore-formingno92.793no
glucose-utilyes82.46no
thermophileno97.467yes
glucose-fermentno90.87yes

External links

@ref: 11577

culture collection no.: CCUG 37584, DSM 44179, ATCC 35219, CIP 81.39, JCM 6405, KCTC 9508

straininfo link

  • @ref: 77845
  • straininfo: 45979

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11577Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44179)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44179
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41114Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11199
53749Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37584)https://www.ccug.se/strain?id=37584
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77845Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45979.1StrainInfo: A central database for resolving microbial strain identifiers
119273Curators of the CIPCollection of Institut Pasteur (CIP 81.39)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.39