Strain identifier
BacDive ID: 8447
Type strain:
Species: Mycobacterium fallax
Strain Designation: 141390005
Strain history: CIP <- 1981, V. Lévy-Frébault, Inst. Pasteur, Paris, France: strain 14 139 0005
NCBI tax ID(s): 1793 (species)
General
@ref: 11577
BacDive-ID: 8447
DSM-Number: 44179
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Mycobacterium fallax 141390005 is an aerobe, mesophilic bacterium that was isolated from water sample.
NCBI tax id
- NCBI tax id: 1793
- Matching level: species
strain history
@ref | history |
---|---|
11577 | <- CIP <- V. Lévy-Frébault, Inst. Pasteur Paris |
67770 | M. Tsukamura 42501 <-- V. Lévy-Frébault. |
119273 | CIP <- 1981, V. Lévy-Frébault, Inst. Pasteur, Paris, France: strain 14 139 0005 |
doi: 10.13145/bacdive8447.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium fallax
- full scientific name: Mycobacterium fallax Lévy-Frébault et al. 1983
synonyms
- @ref: 20215
- synonym: Mycolicibacterium fallax
@ref: 11577
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium fallax
full scientific name: Mycobacterium fallax Lévy-Frébault et al. 1983 emend. Nouioui et al. 2018
strain designation: 141390005
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 94.934 | ||
69480 | 100 | positive | ||
119273 | rod-shaped |
colony morphology
- @ref: 53749
- incubation period: 2 days
multimedia
- @ref: 11577
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44179.jpg
- caption: Medium 645 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11577 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
11577 | PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) | yes | https://mediadive.dsmz.de/medium/250 | Name: PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) Composition: Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Glycerol Distilled water |
41114 | MEDIUM 55 - for Mycobacterium | yes | ||
119273 | CIP Medium 55 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11577 | positive | growth | 28 | mesophilic |
41114 | positive | growth | 30 | mesophilic |
53749 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
119273 | positive | growth | 30 | mesophilic |
119273 | no | growth | 10 | psychrophilic |
119273 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
53749 | aerobe |
119273 | obligate aerobe |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.936
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
119273 | 17632 | nitrate | + | reduction |
119273 | 16301 | nitrite | - | reduction |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | lipase (C 14) | - | |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53749 C12:0 2.4 12 53749 C14:0 13.5 14 53749 C15:0 1.5 15 53749 C16:0 28.3 16 53749 C18:0 1.5 18 53749 C16:0 2OH 0.6 17.233 53749 C16:1 ω7c 4 15.819 53749 C16:1 ω7c/C15:0 ISO 2OH 9.2 15.85 53749 C16:1 ω9c 1.4 15.774 53749 C17:1 ω8c 0.8 16.792 53749 C18:1 ω9c 25.1 17.769 53749 C18:2 ω6,9c/C18:0 ANTE 6.7 17.724 53749 C20:4 ω6,9,12,15c 0.6 19.395 53749 TBSA 10Me18:0 3.9 18.392 53749 Unidentified 0.5 13.765 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11577 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
11577 | - | - | - | +/- | - | +/- | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
11577 | water sample | Seine river | France | FRA | Europe |
53749 | Water | Seine river | France | FRA | Europe |
67770 | Water from the Seine River | ||||
119273 | Environment, Water sample | France | FRA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
11577 | 1 | Risk group (German classification) |
119273 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycobacterium fallax 16S ribosomal RNA gene, partial sequence | AF480600 | 1470 | ena | 1793 |
20218 | M.fallax 16S ribosomal RNA | M29562 | 1348 | ena | 1793 |
20218 | Mycobacterium fallax strain CIP 81.39 16S ribosomal RNA gene, partial sequence | AF547920 | 540 | ena | 1793 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium fallax JCM 6405 | GCA_010726955 | complete | ncbi | 1793 |
66792 | Mycobacterium fallax strain DSM 44179 | 1793.3 | wgs | patric | 1793 |
66792 | Mycolicibacterium fallax strain JCM 6405 | 1793.10 | complete | patric | 1793 |
66792 | Mycolicibacterium fallax DSM 44179 | 2865347724 | draft | img | 1793 |
67770 | Mycolicibacterium fallax DSM 44179 | GCA_002101995 | contig | ncbi | 1793 |
66792 | Mycolicibacterium fallax DSM 44179 | GCA_025821465 | scaffold | ncbi | 1793 |
GC content
- @ref: 67770
- GC-content: 70.3
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 70 | no |
motile | no | 95.286 | no |
flagellated | no | 98.829 | no |
gram-positive | yes | 90.04 | no |
anaerobic | no | 98.936 | no |
aerobic | yes | 79.737 | no |
halophile | no | 87.001 | no |
spore-forming | no | 92.793 | no |
glucose-util | yes | 82.46 | no |
thermophile | no | 97.467 | yes |
glucose-ferment | no | 90.87 | yes |
External links
@ref: 11577
culture collection no.: CCUG 37584, DSM 44179, ATCC 35219, CIP 81.39, JCM 6405, KCTC 9508
straininfo link
- @ref: 77845
- straininfo: 45979
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11577 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44179) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44179 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41114 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11199 | ||||
53749 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 37584) | https://www.ccug.se/strain?id=37584 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
77845 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45979.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119273 | Curators of the CIP | Collection of Institut Pasteur (CIP 81.39) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.39 |