Strain identifier
BacDive ID: 8443
Type strain: 
Species: Mycobacterium triviale
Strain history: <- ATCC <- G. P. Kubica (V subgroup of Runyon Group III) <- Georgia Dept. Public Health, T-255-3
NCBI tax ID(s): 1798 (species)
version 8.1 (current version)
General
@ref: 11553
BacDive-ID: 8443
DSM-Number: 44153
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Mycobacterium triviale DSM 44153 is a mesophilic human pathogen that was isolated from sputum.
NCBI tax id
- NCBI tax id: 1798
- Matching level: species
strain history
- @ref: 11553
- history: <- ATCC <- G. P. Kubica (V subgroup of Runyon Group III) <- Georgia Dept. Public Health, T-255-3
doi: 10.13145/bacdive8443.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium triviale
- full scientific name: Mycobacterium triviale Kubica et al. 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycolicibacillus trivialis
@ref: 11553
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium triviale
full scientific name: Mycobacterium triviale Kubica et al. 1970
type strain: yes
Morphology
multimedia
- @ref: 11553
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44153.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11553 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
| 11553 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
culture temp
- @ref: 11553
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11553
- sample type: sputum
- geographic location: Georgia
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Fluids
- Cat3: #Sputum
Safety information
risk assessment
- @ref: 11553
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycobacterium triviale strain ATCC 23290 16S ribosomal RNA gene, partial sequence | AY734996 | 1395 | ena | 1798 |
| 20218 | Mycobacterium triviale strain ATCC 23292 16S ribosomal RNA gene, partial sequence | AY734994 | 1396 | ena | 1798 |
| 20218 | M.triviale 16S ribosomal RNA | M29571 | 1351 | ena | 1798 |
| 20218 | M.triviale 16S rRNA gene | X88924 | 1453 | ena | 1798 |
| 20218 | M.triviale internal transcribed spacer between 16S and 23S rRNA, genomic sequence | X99221 | 350 | ena | 1798 |
| 20218 | Mycobacterium triviale strain DSM 44153 16S ribosomal RNA gene, partial sequence | AF547974 | 542 | ena | 1798 |
| 20218 | Mycobacterium triviale strain TMC 1453 16S ribosomal RNA gene, partial sequence | DQ058405 | 1362 | ena | 1798 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacillus trivialis DSM 44153 | GCA_002102395 | contig | ncbi | 1798 |
| 66792 | Mycobacterium triviale strain DSM 44153 | 1798.4 | wgs | patric | 1798 |
| 66792 | Mycobacterium tusciae strain DSM 44153 | 75922.3 | wgs | patric | 75922 |
| 66792 | Mycolicibacillus trivialis DSM 44153 | 2865445953 | draft | img | 1798 |
| 66792 | Mycolicibacillus trivialis DSM 44153 | GCA_025821865 | contig | ncbi | 1798 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 95.685 | no |
| gram-positive | yes | 89.399 | no |
| anaerobic | no | 99.019 | no |
| aerobic | yes | 86.996 | no |
| halophile | no | 82.512 | no |
| spore-forming | no | 94.76 | no |
| glucose-util | yes | 65.191 | no |
| flagellated | no | 98.824 | no |
| thermophile | no | 94.112 | no |
| glucose-ferment | no | 89.439 | no |
External links
@ref: 11553
culture collection no.: DSM 44153, ATCC 23292, TMC 1453
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 15722145 | Multicenter evaluation of mycobacteria identification by PCR restriction enzyme analysis in laboratories from Latin America and the Caribbean. | Leao SC, Bernardelli A, Cataldi A, Zumarraga M, Robledo J, Realpe T, Mejia GI, da Silva Telles MA, Chimara E, Velazco M, Fernandez J, Rodrigues PA, Guerrero MI, Leon CI, Porras TB, Rastogi N, Goh KS, Suffys P, da Silva Rocha A, dos Santos Netto D, Ritacco V, Lopez B, Barrera L, Palomino JC, Martin A, Portaels F | J Microbiol Methods | 10.1016/j.mimet.2004.11.015 | 2004 | Bacterial Proteins/chemistry/genetics, Chaperonin 60, Chaperonins/chemistry/genetics, DNA, Bacterial/chemistry/genetics, Guadeloupe, Humans, Mycobacterium/genetics/*isolation & purification, Mycobacterium Infections/*diagnosis, Polymerase Chain Reaction/*methods/standards, Restriction Mapping, South America | Pathogenicity |
| Phylogeny | 21784962 | Mycobacterium koreense sp. nov., a slowly growing non-chromogenic species closely related to Mycobacterium triviale. | Kim BJ, Jeong J, Lee SH, Kim SR, Yu HK, Park YG, Kim KJ, Kook YH, Kim BJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.033274-0 | 2011 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics, DNA, Bacterial/genetics, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/growth & development/*isolation & purification, Mycobacterium Infections/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Alignment | Pathogenicity |
| Phylogeny | 23159753 | Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen. | Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.045070-0 | 2012 | DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sputum/*microbiology | Pathogenicity |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11553 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44153) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44153 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |