Strain identifier
BacDive ID: 8438
Type strain: 
Species: Mycobacterium komossense
Strain Designation: Ko 2
Strain history: <- S. Rüsch-Gerdes <- ATCC <- J. Kazda, Ko 2
NCBI tax ID(s): 1779 (species)
version 8.1 (current version)
General
@ref: 11477
BacDive-ID: 8438
DSM-Number: 44078
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium komossense Ko 2 is a mesophilic bacterium that was isolated from Spaghnum moss.
NCBI tax id
- NCBI tax id: 1779
- Matching level: species
strain history
- @ref: 11477
- history: <- S. Rüsch-Gerdes <- ATCC <- J. Kazda, Ko 2
doi: 10.13145/bacdive8438.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium komossense
- full scientific name: Mycobacterium komossense Kazda and Müller 1979 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycolicibacterium komossense
@ref: 11477
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium komossense
full scientific name: Mycobacterium komossense Kazda and Müller 1979
strain designation: Ko 2
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11477 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 11477 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | yes | https://mediadive.dsmz.de/medium/354 | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water |
culture temp
- @ref: 11477
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11477
- sample type: Spaghnum moss
- host species: Sphagnum
- geographic location: South Sweden, Komosse swamp
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Peat moss
Safety information
risk assessment
- @ref: 11477
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | M.komossense 16S ribosomal RNA gene | M59284 | 146 | ena | 1779 |
| 20218 | M.komossense 16S ribosomal RNA, part | X55591 | 1462 | ena | 1779 |
| 20218 | Mycobacterium komossense 16S ribosomal RNA gene, partial sequence | AY438077 | 540 | ena | 1779 |
Genome sequences
- @ref: 66792
- description: Mycolicibacterium komossense DSM 44078
- accession: GCA_025822605
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1779
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.033 | no |
| flagellated | no | 98.274 | no |
| gram-positive | yes | 86.558 | no |
| anaerobic | no | 99.354 | no |
| aerobic | yes | 91.399 | no |
| halophile | no | 93.195 | no |
| spore-forming | no | 83.893 | no |
| glucose-ferment | no | 90.595 | no |
| thermophile | no | 99.457 | no |
| glucose-util | yes | 87.272 | no |
External links
@ref: 11477
culture collection no.: DSM 44078, ATCC 33013, CIP 105293
straininfo link
- @ref: 77837
- straininfo: 13216
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11477 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44078) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44078 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 77837 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13216.1 | StrainInfo: A central database for resolving microbial strain identifiers |