Strain identifier

BacDive ID: 8432

Type strain: Yes

Species: Mycobacterium interjectum

Strain Designation: 4185/92

Strain history: <- E.C. Böttger, 4185/92

NCBI tax ID(s): 33895 (species)

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General

@ref: 11465

BacDive-ID: 8432

DSM-Number: 44064

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Mycobacterium interjectum 4185/92 is a microaerophile, mesophilic bacterium that was isolated from a child with cervical lymphadentitis.

NCBI tax id

  • NCBI tax id: 33895
  • Matching level: species

strain history

  • @ref: 11465
  • history: <- E.C. Böttger, 4185/92

doi: 10.13145/bacdive8432.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium interjectum
  • full scientific name: Mycobacterium interjectum Springer et al. 1995

@ref: 11465

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium interjectum

full scientific name: Mycobacterium interjectum Springer et al. 1995 emend. Nouioui et al. 2018

strain designation: 4185/92

type strain: yes

Morphology

multimedia

@refmultimedia contentintellectual property rightscaption
11465https://www.dsmz.de/microorganisms/photos/DSM_44064-1.jpg© Leibniz-Institut DSMZ
11465https://www.dsmz.de/microorganisms/photos/DSM_44064.jpg© Leibniz-Institut DSMZMedium 645 37°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11465MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11465LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)yeshttps://mediadive.dsmz.de/medium/354Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water

culture temp

@refgrowthtypetemperature
11465positivegrowth37
53708positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 53708
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

@refsample type
11465a child with cervical lymphadentitis
53708Human cervical lymphadentitis

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Child

Safety information

risk assessment

  • @ref: 11465
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium interjectum ATCC:51457 16S ribosomal RNA gene, partial sequenceHM0379981431nuccore33895
20218Mycobacterium interjectum strain DSM 44064 16S ribosomal RNA gene, partial sequenceAF547937542nuccore33895
20218Mycobacterium interjectum strain DSM 44064 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceKJ586583470nuccore33895
124043Mycobacterium interjectum partial 16S rRNA gene, strain ATCC 51457LT2236941508nuccore33895

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium interjectum ATCC 51457TGCA_900078675scaffoldncbi33895
66792Mycobacterium interjectum DSM 44064GCA_002102225contigncbi33895
66792Mycobacterium interjectum strain DSM 4406433895.5wgspatric33895
66792Mycobacterium interjectum strain type strain: ATCC 5145733895.3wgspatric33895
66792Mycobacterium interjectum ATCC 514572775507221draftimg33895
66792Mycobacterium interjectum DSM 44064GCA_025821415contigncbi33895

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno79no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes85.658no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.912no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.182yes
69480spore-formingspore-formingAbility to form endo- or exosporesno58.571no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.577no
69480flagellatedmotile2+Ability to perform flagellated movementno86.5no

External links

@ref: 11465

culture collection no.: DSM 44064, ATCC 51457, CCUG 37514

straininfo link

  • @ref: 77831
  • straininfo: 42997

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7508452Mycobacterium interjectum, a new species isolated from a patient with chronic lymphadenitis.Springer B, Kirschner P, Rost-Meyer G, Schroder KH, Kroppenstedt RM, Bottger ECJ Clin Microbiol10.1128/jcm.31.12.3083-3089.19931993Base Sequence, Chronic Disease, DNA Primers/genetics, DNA, Bacterial/genetics, Humans, Infant, Lipids/chemistry, Lymphadenitis/*microbiology, Male, Molecular Sequence Data, Mycobacterium/classification/genetics/*isolation & purification, Mycobacterium Infections/*microbiology, Neck, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species SpecificityPathogenicity
Genetics27231376Draft Genome Sequence of Mycobacterium interjectum Strain ATCC 51457T.Levasseur A, Asmar S, Robert C, Drancourt MGenome Announc10.1128/genomeA.00452-162016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11465Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44064)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44064
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
53708Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37514)https://www.ccug.se/strain?id=37514
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77831Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42997.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy