Strain identifier

BacDive ID: 8432

Type strain: Yes

Species: Mycobacterium interjectum

Strain Designation: 4185/92

Strain history: <- E.C. Böttger, 4185/92

NCBI tax ID(s): 33895 (species)

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General

@ref: 11465

BacDive-ID: 8432

DSM-Number: 44064

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive

description: Mycobacterium interjectum 4185/92 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from a child with cervical lymphadentitis.

NCBI tax id

  • NCBI tax id: 33895
  • Matching level: species

strain history

  • @ref: 11465
  • history: <- E.C. Böttger, 4185/92

doi: 10.13145/bacdive8432.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium interjectum
  • full scientific name: Mycobacterium interjectum Springer et al. 1995

@ref: 11465

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium interjectum

full scientific name: Mycobacterium interjectum Springer et al. 1995 emend. Nouioui et al. 2018

strain designation: 4185/92

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

@refmultimedia contentintellectual property rightscaption
11465https://www.dsmz.de/microorganisms/photos/DSM_44064-1.jpg© Leibniz-Institut DSMZ
11465https://www.dsmz.de/microorganisms/photos/DSM_44064.jpg© Leibniz-Institut DSMZMedium 645 37°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11465MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11465LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)yeshttps://mediadive.dsmz.de/medium/354Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water

culture temp

@refgrowthtypetemperaturerange
11465positivegrowth37mesophilic
53708positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 53708
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.963

Isolation, sampling and environmental information

isolation

@refsample type
11465a child with cervical lymphadentitis
53708Human cervical lymphadentitis

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Child

Safety information

risk assessment

  • @ref: 11465
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium interjectum ATCC:51457 16S ribosomal RNA gene, partial sequenceHM0379981431ena33895
20218Mycobacterium interjectum strain DSM 44064 16S ribosomal RNA gene, partial sequenceAF547937542ena33895
20218Mycobacterium interjectum strain DSM 44064 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceKJ586583470ena33895

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium interjectum ATCC 51457TGCA_900078675scaffoldncbi33895
66792Mycobacterium interjectum DSM 44064GCA_002102225contigncbi33895
66792Mycobacterium interjectum strain DSM 4406433895.5wgspatric33895
66792Mycobacterium interjectum strain type strain: ATCC 5145733895.3wgspatric33895
66792Mycobacterium interjectum ATCC 514572775507221draftimg33895
66792Mycobacterium interjectum DSM 44064GCA_025821415contigncbi33895

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno79no
motileno93.862no
flagellatedno98.948no
flagellatedno98.948no
gram-positiveyes88.855no
gram-positiveyes88.855no
anaerobicno99.053no
anaerobicno99.053no
aerobicyes89.885yes
aerobicyes89.885yes
halophileno92.929no
halophileno92.929no
spore-formingno89.333no
spore-formingno89.333no
glucose-fermentno92.219no
glucose-fermentno92.219no
thermophileno98.74yes
thermophileno98.74yes
glucose-utilyes66.767no
glucose-utilyes66.767no
motileno93.862no

External links

@ref: 11465

culture collection no.: DSM 44064, ATCC 51457, CCUG 37514

straininfo link

  • @ref: 77831
  • straininfo: 42997

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7508452Mycobacterium interjectum, a new species isolated from a patient with chronic lymphadenitis.Springer B, Kirschner P, Rost-Meyer G, Schroder KH, Kroppenstedt RM, Bottger ECJ Clin Microbiol10.1128/jcm.31.12.3083-3089.19931993Base Sequence, Chronic Disease, DNA Primers/genetics, DNA, Bacterial/genetics, Humans, Infant, Lipids/chemistry, Lymphadenitis/*microbiology, Male, Molecular Sequence Data, Mycobacterium/classification/genetics/*isolation & purification, Mycobacterium Infections/*microbiology, Neck, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species SpecificityPathogenicity
Genetics27231376Draft Genome Sequence of Mycobacterium interjectum Strain ATCC 51457T.Levasseur A, Asmar S, Robert C, Drancourt MGenome Announc10.1128/genomeA.00452-162016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11465Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44064)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44064
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
53708Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37514)https://www.ccug.se/strain?id=37514
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
77831Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42997.1StrainInfo: A central database for resolving microbial strain identifiers