Strain identifier
BacDive ID: 8299
Type strain:
Species: Mycobacterium senegalense
Strain Designation: GA 924 (N169), M 263
Strain history: NCTC 10956 <-- P. Perreau <-- G. Chamoiseau 378 <-- A. Perpezat.
NCBI tax ID(s): 1796 (species)
General
@ref: 11222
BacDive-ID: 8299
DSM-Number: 43656
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Mycobacterium senegalense GA 924 is a mesophilic animal pathogen that was isolated from bovine lymph node.
NCBI tax id
- NCBI tax id: 1796
- Matching level: species
strain history
@ref | history |
---|---|
11222 | <- M. Ridell, GA 924 (N169) <- M. Goodfellow, M 263 <- M.P. Lechevalier <- NCTC (Mycobacterium farcinogenes subsp. senegalense) <- P. Perreau, Maison-Alfort, France <- M. Chamoiseau, 378 |
67770 | NCTC 10956 <-- P. Perreau <-- G. Chamoiseau 378 <-- A. Perpezat. |
doi: 10.13145/bacdive8299.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium senegalense
- full scientific name: Mycobacterium senegalense (Chamoiseau 1973) Chamoiseau 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium farcinogenes subsp. senegalense 20215 Mycolicibacterium senegalense
@ref: 11222
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium senegalense
full scientific name: Mycobacterium senegalense (Chamoiseau 1973) Chamoiseau 1979
strain designation: GA 924 (N169), M 263
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.43 | |
69480 | 100 | positive |
multimedia
- @ref: 11222
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43656.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11222 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
11222 | MYCOBACTERIUM MEDIUM (DSMZ Medium 219) | yes | https://mediadive.dsmz.de/medium/219 | Name: MYCOBACTERIUM MEDIUM (DSMZ Medium 219) Composition: Agar 20.0 g/l Na2HPO4 x 12 H2O 2.5 g/l Yeast extract 2.0 g/l Proteose peptone no. 3 2.0 g/l Casein peptone 2.0 g/l Sodium citrate 1.5 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.6 g/l Tween 0.5 g/l Glycerol Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11222 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 90 |
69480 | no | 99.833 |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
11222 | bovine lymph node |
47250 | Bovine lymph node |
67770 | Bovine farcy lesion |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body-Site | #Organ | #Lymph node |
taxonmaps
- @ref: 69479
- File name: preview.99_515.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_115;97_219;98_419;99_515&stattab=map
- Last taxonomy: Mycolicibacterium
- 16S sequence: AY457081
- Sequence Identity:
- Total samples: 496
- soil counts: 45
- aquatic counts: 64
- animal counts: 50
- plant counts: 337
Safety information
risk assessment
- @ref: 11222
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Mycobacterium senegalense 16S ribosomal RNA gene, partial sequence | AF480596 | 1470 | ena | 1796 |
20218 | Mycobacterium senegalense partial 16S rRNA gene, strain NCTC 10956 | AM884321 | 551 | ena | 1796 |
20218 | Mycobacterium senegalense strain ATCC 35796 16S-23S intergenic spacer region, partial sequence | AY684050 | 354 | ena | 1796 |
20218 | M.senegalense 16S ribosomal RNA | M29567 | 1356 | ena | 1796 |
20218 | Mycobacterium senegalense 16S rRNA gene, partial | Y11582 | 457 | ena | 1796 |
67770 | Mycolicibacterium senegalense strain CIP 104941 16S ribosomal RNA gene, partial sequence | AY457081 | 1483 | ena | 1796 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mycolicibacterium senegalense ATCC 35796 | GCA_019645875 | complete | ncbi | 1796 |
66792 | Mycolicibacterium senegalense strain ATCC 35796 | 1796.13 | complete | patric | 1796 |
66792 | Mycobacterium senegalense DSM 43656 | 2923412827 | draft | img | 1796 |
66792 | Mycolicibacterium senegalense DSM 43656 | GCA_025822895 | scaffold | ncbi | 1796 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 90 | no |
flagellated | no | 97.738 | no |
gram-positive | yes | 90.033 | no |
anaerobic | no | 99.359 | no |
aerobic | yes | 87.076 | no |
halophile | no | 93.993 | no |
spore-forming | no | 85.421 | no |
motile | no | 93.224 | no |
thermophile | no | 99.611 | yes |
glucose-util | yes | 87.764 | no |
glucose-ferment | no | 90.674 | no |
External links
@ref: 11222
culture collection no.: DSM 43656, ATCC 35796, NCTC 10956, TMC 806, CCUG 21001, JCM 15467, CIP 104941
straininfo link
- @ref: 77701
- straininfo: 93020
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11222 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43656) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43656 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
47250 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 21001) | https://www.ccug.se/strain?id=21001 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77701 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID93020.1 | StrainInfo: A central database for resolving microbial strain identifiers |