Strain identifier

BacDive ID: 8299

Type strain: Yes

Species: Mycobacterium senegalense

Strain Designation: GA 924 (N169), M 263

Strain history: NCTC 10956 <-- P. Perreau <-- G. Chamoiseau 378 <-- A. Perpezat.

NCBI tax ID(s): 1796 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11222

BacDive-ID: 8299

DSM-Number: 43656

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Mycobacterium senegalense GA 924 is a mesophilic animal pathogen that was isolated from bovine lymph node.

NCBI tax id

  • NCBI tax id: 1796
  • Matching level: species

strain history

@refhistory
11222<- M. Ridell, GA 924 (N169) <- M. Goodfellow, M 263 <- M.P. Lechevalier <- NCTC (Mycobacterium farcinogenes subsp. senegalense) <- P. Perreau, Maison-Alfort, France <- M. Chamoiseau, 378
67770NCTC 10956 <-- P. Perreau <-- G. Chamoiseau 378 <-- A. Perpezat.

doi: 10.13145/bacdive8299.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium senegalense
  • full scientific name: Mycobacterium senegalense (Chamoiseau 1973) Chamoiseau 1979 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Mycobacterium farcinogenes subsp. senegalense
    20215Mycolicibacterium senegalense

@ref: 11222

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium senegalense

full scientific name: Mycobacterium senegalense (Chamoiseau 1973) Chamoiseau 1979

strain designation: GA 924 (N169), M 263

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.43
69480100positive

multimedia

  • @ref: 11222
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43656.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11222MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
11222MYCOBACTERIUM MEDIUM (DSMZ Medium 219)yeshttps://mediadive.dsmz.de/medium/219Name: MYCOBACTERIUM MEDIUM (DSMZ Medium 219) Composition: Agar 20.0 g/l Na2HPO4 x 12 H2O 2.5 g/l Yeast extract 2.0 g/l Proteose peptone no. 3 2.0 g/l Casein peptone 2.0 g/l Sodium citrate 1.5 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.6 g/l Tween 0.5 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
11222positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no90
69480no99.833

Isolation, sampling and environmental information

isolation

@refsample type
11222bovine lymph node
47250Bovine lymph node
67770Bovine farcy lesion

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Lymph node

taxonmaps

  • @ref: 69479
  • File name: preview.99_515.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_115;97_219;98_419;99_515&stattab=map
  • Last taxonomy: Mycolicibacterium
  • 16S sequence: AY457081
  • Sequence Identity:
  • Total samples: 496
  • soil counts: 45
  • aquatic counts: 64
  • animal counts: 50
  • plant counts: 337

Safety information

risk assessment

  • @ref: 11222
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium senegalense 16S ribosomal RNA gene, partial sequenceAF4805961470ena1796
20218Mycobacterium senegalense partial 16S rRNA gene, strain NCTC 10956AM884321551ena1796
20218Mycobacterium senegalense strain ATCC 35796 16S-23S intergenic spacer region, partial sequenceAY684050354ena1796
20218M.senegalense 16S ribosomal RNAM295671356ena1796
20218Mycobacterium senegalense 16S rRNA gene, partialY11582457ena1796
67770Mycolicibacterium senegalense strain CIP 104941 16S ribosomal RNA gene, partial sequenceAY4570811483ena1796

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycolicibacterium senegalense ATCC 35796GCA_019645875completencbi1796
66792Mycolicibacterium senegalense strain ATCC 357961796.13completepatric1796
66792Mycobacterium senegalense DSM 436562923412827draftimg1796
66792Mycolicibacterium senegalense DSM 43656GCA_025822895scaffoldncbi1796

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno90no
flagellatedno97.738no
gram-positiveyes90.033no
anaerobicno99.359no
aerobicyes87.076no
halophileno93.993no
spore-formingno85.421no
motileno93.224no
thermophileno99.611yes
glucose-utilyes87.764no
glucose-fermentno90.674no

External links

@ref: 11222

culture collection no.: DSM 43656, ATCC 35796, NCTC 10956, TMC 806, CCUG 21001, JCM 15467, CIP 104941

straininfo link

  • @ref: 77701
  • straininfo: 93020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11222Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43656)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43656
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
47250Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 21001)https://www.ccug.se/strain?id=21001
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77701Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID93020.1StrainInfo: A central database for resolving microbial strain identifiers