Strain identifier

BacDive ID: 827

Type strain: No

Species: Bacillus caldovelox

Strain Designation: YT-F

Strain history: CIP <- 2009, J.F. Charles, Inst. Pasteur, Paris, France <- 2001, B. Papierok, Inst. Pasteur, Paris, France <- 1998, M.M. Lecadet, Inst. Pasteur, Paris, France <- 1992, H. de Barjac, Inst. Pasteur, Paris, France <- 1976, DSMZ

NCBI tax ID(s): 208436 (species)

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General

@ref: 185

BacDive-ID: 827

DSM-Number: 411

keywords: 16S sequence, Bacteria, thermophilic

description: Bacillus caldovelox YT-F is a thermophilic bacterium that was isolated from superheated pool water.

NCBI tax id

  • NCBI tax id: 208436
  • Matching level: species

strain history

@refhistory
185<- W. Heinen, YT-F (Bacillus caldovelox)
117100CIP <- 2009, J.F. Charles, Inst. Pasteur, Paris, France <- 2001, B. Papierok, Inst. Pasteur, Paris, France <- 1998, M.M. Lecadet, Inst. Pasteur, Paris, France <- 1992, H. de Barjac, Inst. Pasteur, Paris, France <- 1976, DSMZ

doi: 10.13145/bacdive827.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus caldovelox
  • full scientific name: Bacillus caldovelox Heinen and Heinen 1972

@ref: 185

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus caldovelox

full scientific name: Bacillus sp.

strain designation: YT-F

type strain: no

Culture and growth conditions

culture medium

  • @ref: 185
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 185
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
117100glucose+fermentation17234
117100inuline-fermentation2759
117100lactose-fermentation17716
117100nitrate-reduction17632
117100xylose+fermentation18222

metabolite tests

  • @ref: 117100
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
117100lecithinase-
117100urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117100-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
185superheated pool waterUSAUSANorth America
117100GermanyDEUEuropeBraunschweig1976

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_155454.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_191;97_207;98_231;99_155454&stattab=map
  • Last taxonomy: Geobacillus
  • 16S sequence: M77485
  • Sequence Identity:
  • Total samples: 51
  • aquatic counts: 5
  • animal counts: 46

Safety information

risk assessment

  • @ref: 117100
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Geobacillus sp. NBRC 15315 gene for 16S rRNA, partial sequenceAB6808341483ena427331
20218Bacillus caldovelox (DSM 411) ribosomal RNA small subunitM774851432ena33931
20218B.caldovelox gene for 16S ribosomal RNAZ269251521ena33931

External links

@ref: 185

culture collection no.: DSM 411, IFO 15315, NBRC 15315, CRBIP3.2656

straininfo link

  • @ref: 70501
  • straininfo: 9848

literature

  • topic: Enzymology
  • Pubmed-ID: 15322355
  • title: Thermostable flavin reductase that couples with dibenzothiophene monooxygenase, from thermophilic Bacillus sp. DSM411: purification, characterization, and gene cloning.
  • authors: Ohshiro T, Yamada H, Shimoda T, Matsubara T, Izumi Y
  • journal: Biosci Biotechnol Biochem
  • DOI: 10.1271/bbb.68.1712
  • year: 2004
  • mesh: Bacillus/*enzymology, Cloning, Molecular, Escherichia coli/genetics, FMN Reductase/*metabolism, Flavins/*metabolism, NAD/metabolism, NADP/metabolism, Oxidoreductases/*metabolism, Rhodococcus/*enzymology, Thiophenes/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
185Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 411)https://www.dsmz.de/collection/catalogue/details/culture/DSM-411
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70501Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9848.1StrainInfo: A central database for resolving microbial strain identifiers
117100Curators of the CIPCollection of Institut Pasteur (CRBIP3.2656)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP3.2656