Strain identifier

BacDive ID: 825

Type strain: No

Species: Bacillus caldolyticus

Strain Designation: YT-P

Strain history: CIP <- 2009, J.F. Charles, Inst. Pasteur, Paris, France <- 2001, B. Papierok, Inst. Pasteur, Paris, France <- 1998, M.M. Lecadet, Inst. Pasteur, Paris, France <- 1992, H. de Barjac, Inst. Pasteur, Paris, France <- 1976, DSMZ

NCBI tax ID(s): 427332 (species)

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General

@ref: 183

BacDive-ID: 825

DSM-Number: 405

keywords: 16S sequence, thermophilic

description: Bacillus caldolyticus YT-P is a thermophilic bacterium that was isolated from hot natural pool.

NCBI tax id

  • NCBI tax id: 427332
  • Matching level: species

strain history

@refhistory
183<- W. Heinen, YP-T (Bacillus caldolyticus)
117099CIP <- 2009, J.F. Charles, Inst. Pasteur, Paris, France <- 2001, B. Papierok, Inst. Pasteur, Paris, France <- 1998, M.M. Lecadet, Inst. Pasteur, Paris, France <- 1992, H. de Barjac, Inst. Pasteur, Paris, France <- 1976, DSMZ

doi: 10.13145/bacdive825.20230509.8.1

Name and taxonomic classification

@ref: 183

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus caldolyticus

full scientific name: Bacillus sp.

strain designation: YT-P

type strain: no

Culture and growth conditions

culture medium

  • @ref: 183
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 183
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

compound production

@refcompound
183amylase, thermostable
183protease
183restriction endonuclease BclI
183L leucine dehydrogenase

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
117099glucose+fermentation17234
117099inuline-fermentation2759
117099lactose-fermentation17716
117099nitrate-reduction17632
117099xylose+fermentation18222

metabolite tests

  • @ref: 117099
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -

enzymes

@refvalueactivityec
117099lecithinase-
117099urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117099-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
183hot natural poolUSAUSANorth America
117099GermanyDEUEuropeBraunschweig1976

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 117099
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Geobacillus sp. NBRC 15313 gene for 16S rRNA, partial sequenceAB6808321483ena1113646
20218Bacillus caldolyticus (DSM 405) ribosomal RNA small subunitM774841432ena1394
20218B.caldolyticus gene for 16S ribosomal RNAZ269241516ena1394

External links

@ref: 183

culture collection no.: DSM 405, IFO 15313, NBRC 15313, CRBIP3.2654

straininfo link

  • @ref: 70499
  • straininfo: 12326

literature

  • topic: Enzymology
  • Pubmed-ID: 10091322
  • title: The amylopullulanase of Bacillus sp. DSM 405.
  • authors: Brunswick JM, Kelly CT, Fogarty WM
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s002530051378
  • year: 1999
  • mesh: Bacillus/*enzymology/growth & development, *Bacterial Proteins/chemistry/isolation & purification/metabolism, Binding Sites, Carbodiimides/pharmacology, Enzyme Activation, Glucans/metabolism, *Glycoside Hydrolases/chemistry/isolation & purification/metabolism/pharmacology, Kinetics, Starch/metabolism, alpha-Amylases/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
183Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 405)https://www.dsmz.de/collection/catalogue/details/culture/DSM-405
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68371Automatically annotated from API 50CH acid
70499Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12326.1StrainInfo: A central database for resolving microbial strain identifiers
117099Curators of the CIPCollection of Institut Pasteur (CRBIP3.2654)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP3.2654