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Strain identifier

BacDive ID: 8210

Type strain: Yes

Species: Paraperlucidibaca baekdonensis

Strain Designation: RL-2

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 748120 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18150

BacDive-ID: 8210

DSM-Number: 26022

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative

description: Paraperlucidibaca baekdonensis RL-2 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 748120
  • Matching level: species

strain history

doi: 10.13145/bacdive8210.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Paraperlucidibaca
  • species: Paraperlucidibaca baekdonensis
  • full scientific name: Paraperlucidibaca baekdonensis Oh et al. 2011

@ref: 18150

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Paraperlucidibaca

species: Paraperlucidibaca baekdonensis

full scientific name: Paraperlucidibaca baekdonensis Oh et al. 2011

strain designation: RL-2

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
67771negative
69480negative99.607

colony morphology

@refincubation period
181503-7 days
61900>3 days

Culture and growth conditions

culture medium

  • @ref: 18150
  • name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18150positivegrowth20psychrophilic
61900positivegrowth20-30
67771positivegrowth20-25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
61900aerobe
67771aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.671

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 96.873

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18150seawaterEast Sea, Baekdo HarborRepublic of KoreaKORAsia
61900SeawaterEast Sea,Baekdo harborRepublic of KoreaKORAsia2008
67771From seawaterEast SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_62634.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_669;96_3622;97_34402;98_44352;99_62634&stattab=map
  • Last taxonomy: Paraperlucidibaca baekdonensis
  • 16S sequence: GU731671
  • Sequence Identity:
  • Total samples: 328
  • soil counts: 9
  • aquatic counts: 297
  • animal counts: 22

Safety information

risk assessment

  • @ref: 18150
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18150
  • description: Paraperlucidibaca baekdonensis strain RL-2 16S ribosomal RNA gene, partial sequence
  • accession: GU731671
  • length: 1460
  • database: ena
  • NCBI tax ID: 748120

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraperlucidibaca baekdonensis DSM 26022GCA_003387535scaffoldncbi748120
66792Paraperlucidibaca baekdonensis strain DSM 26022748120.3wgspatric748120
66792Paraperlucidibaca baekdonensis DSM 260222770939643draftimg748120
66792Staphylococcus aureus 087HGCA_900097665scaffoldpatric1280

GC content

  • @ref: 18150
  • GC-content: 61.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18150

culture collection no.: DSM 26022, CCUG 59307, KCTC 23145

straininfo link

@refpassport
20218http://www.straininfo.net/strains/866097
20218http://www.straininfo.net/strains/866098

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20601489Paraperlucidibaca baekdonensis gen. nov., sp. nov., isolated from seawater.Oh KH, Lee SY, Lee MH, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.023994-02010Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Moraxellaceae/*classification/genetics/*isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysisGenetics
Phylogeny23749278Paraperlucidibaca wandonensis sp. nov., isolated from seawater, and emended description of the genus Paraperlucidibaca Oh et al. 2011.Yoon JH, Park S, Jung YT, Lee JS, Lee KCInt J Syst Evol Microbiol10.1099/ijs.0.048645-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Moraxellaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water MicrobiologyGenetics
Phylogeny30783797Amnimonas aquatica gen. nov., sp. nov., Isolated from a Freshwater River.Lee Y, Park HY, Jeon COCurr Microbiol10.1007/s00284-019-01652-52019Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial/genetics, Moraxellaceae/chemistry/*classification/genetics/*physiology, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Species Specificity, Ubiquinone/chemistry, *Water MicrobiologyPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18150Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26022)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26022
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
61900Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59307)https://www.ccug.se/strain?id=59307
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)