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Strain identifier

BacDive ID: 8208

Type strain: Yes

Species: Psychrobacter lutiphocae

Strain history: <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB L-1110

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15782

BacDive-ID: 8208

DSM-Number: 21542

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Psychrobacter lutiphocae DSM 21542 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from faeces of a seal.

NCBI tax id

NCBI tax idMatching level
1123033strain
540500species

strain history: <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB L-1110

doi: 10.13145/bacdive8208.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter lutiphocae
  • full scientific name: Psychrobacter lutiphocae Yassin and Busse 2009

@ref: 15782

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter lutiphocae

full scientific name: Psychrobacter lutiphocae Yassin and Busse 2009

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
29212negativeovoid-shapedno
69480negative99.48

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15782COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41770MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
15782positivegrowth37mesophilic
29212positivegrowth10-37
29212positiveoptimum23.5psychrophilic
41770positivegrowth37mesophilic
61033positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29212aerobe
61033aerobe

spore formation

@refspore formationconfidence
29212no
69480no99.199

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
29212NaClpositivegrowth0-6 %
29212NaClpositiveoptimum3 %
69480non-halophilic95.017

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2921225115malate+carbon source
2921217632nitrate+reduction

enzymes

@refvalueactivityec
29212catalase+1.11.1.6
29212cytochrome oxidase+1.9.3.1
29212urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
15782faeces of a sealSchleswig-HolsteinGermanyDEUEurope
61033Seal fecesSchleswig-HolsteinGermanyDEUEurope1993

isolation source categories

Cat1Cat2Cat3
#Host#Mammals
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2009.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_1308;98_1573;99_2009&stattab=map
  • Last taxonomy: Psychrobacter lutiphocae subclade
  • 16S sequence: FM165580
  • Sequence Identity:
  • Total samples: 650
  • soil counts: 28
  • aquatic counts: 286
  • animal counts: 333
  • plant counts: 3

Safety information

risk assessment

  • @ref: 15782
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15782
  • description: Psychrobacter lutiphocae partial 16S rRNA gene, type strain IMMIB L-1110T
  • accession: FM165580
  • length: 1502
  • database: ena
  • NCBI tax ID: 540500

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Psychrobacter lutiphocae DSM 21542 DSM 21542GCA_000382145scaffoldncbi1123033
66792Psychrobacter lutiphocae DSM 215421123033.3wgspatric1123033
66792Psychrobacter lutiphocae DSM 215422521172648draftimg1123033
66792Streptococcus pneumoniae SMRU2044GCA_001101645contigpatric1313

External links

@ref: 15782

culture collection no.: DSM 21542, CCUG 56590, IMMIB L-1110

straininfo link

@refpassport
20218http://www.straininfo.net/strains/844718
20218http://www.straininfo.net/strains/844717

literature

  • topic: Phylogeny
  • Pubmed-ID: 19605717
  • title: Psychrobacter lutiphocae sp. nov., isolated from the faeces of a seal.
  • authors: Yassin AF, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.008706-0
  • year: 2009
  • mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Feces/*microbiology, Molecular Sequence Data, Phylogeny, Polyamines/analysis, Psychrobacter/*classification/genetics/*isolation & purification/physiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seals, Earless/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15782Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21542)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21542
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2563310.1099/ijs.0.008706-019605717
29212Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125633
41770Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7829
61033Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56590)https://www.ccug.se/strain?id=56590
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)