Strain identifier

BacDive ID: 8200

Type strain: Yes

Species: Psychrobacter salsus

Strain Designation: DD 48, DD48

Strain history: CIP <- 2005, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain DD48

NCBI tax ID(s): 219741 (species)

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General

@ref: 5853

BacDive-ID: 8200

DSM-Number: 15338

keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, rod-shaped

description: Psychrobacter salsus DD 48 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from fast ice.

NCBI tax id

  • NCBI tax id: 219741
  • Matching level: species

strain history

@refhistory
5853<- S. Shivaji; DD48
122407CIP <- 2005, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain DD48

doi: 10.13145/bacdive8200.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter salsus
  • full scientific name: Psychrobacter salsus Shivaji et al. 2005

@ref: 5853

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter salsus

full scientific name: Psychrobacter salsus Shivaji et al. 2005

strain designation: DD 48, DD48

type strain: yes

Morphology

cell morphology

  • @ref: 122407
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 122407

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5853LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
39224Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122407CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5853positivegrowth22psychrophilic
39224positivegrowth20psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122407
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12240717632nitrate-reduction
12240716301nitrite-reduction

metabolite production

  • @ref: 122407
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
122407oxidase+
122407alcohol dehydrogenase-1.1.1.1
122407catalase+1.11.1.6
122407lysine decarboxylase-4.1.1.18
122407ornithine decarboxylase-4.1.1.17
122407urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122407-++++++---++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
5853fast iceAdelie IslandAustralia and Oceania
122407Environment, Fast iceAntarcticaAntarcticaATA

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Ice

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
58531Risk group (German classification)
1224071Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5853
  • description: Psychrobacter salsus partial 16S rRNA gene, strain DD48
  • accession: AJ539104
  • length: 1454
  • database: ena
  • NCBI tax ID: 219741

GC content

  • @ref: 5853
  • GC-content: 43

External links

@ref: 5853

culture collection no.: DSM 15338, CIP 109038, MTCC 4826

straininfo link

  • @ref: 77603
  • straininfo: 138037

literature

  • topic: Phylogeny
  • Pubmed-ID: 15612619
  • title: Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. isolated from fast ice from Adelie Land, Antarctica.
  • authors: Shivaji S, Reddy GS, Raghavan PU, Sarita NB, Delille D
  • journal: Syst Appl Microbiol
  • DOI: 10.1078/0723202042369956
  • year: 2004
  • mesh: Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Electrophoresis, Polyacrylamide Gel, Fatty Acids/analysis/isolation & purification, Genes, rRNA/genetics, *Ice, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis/isolation & purification, Psychrobacter/chemistry/*classification/genetics/*isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
5853Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15338)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15338
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39224Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6735
68382Automatically annotated from API zym
77603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138037.1StrainInfo: A central database for resolving microbial strain identifiers
122407Curators of the CIPCollection of Institut Pasteur (CIP 109038)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109038