Strain identifier
BacDive ID: 8199
Type strain:
Species: Psychrobacter adeliensis
Strain Designation: SJ 14, SJ14
Strain history: CIP <- 2005, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain SJ14
NCBI tax ID(s): 219742 (species)
General
@ref: 5850
BacDive-ID: 8199
DSM-Number: 15333
keywords: 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative, rod-shaped
description: Psychrobacter adeliensis SJ 14 is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from fast ice.
NCBI tax id
- NCBI tax id: 219742
- Matching level: species
strain history
@ref | history |
---|---|
5850 | <- S. Shivaji; SJ14 |
116039 | CIP <- 2005, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain SJ14 |
doi: 10.13145/bacdive8199.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter adeliensis
- full scientific name: Psychrobacter adeliensis Shivaji et al. 2005
@ref: 5850
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter adeliensis
full scientific name: Psychrobacter adeliensis Shivaji et al. 2005
strain designation: SJ 14, SJ14
type strain: yes
Morphology
cell morphology
- @ref: 116039
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 116039
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5850 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
42078 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
116039 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 | |
116039 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5850 | positive | growth | 22 | psychrophilic |
42078 | positive | growth | 20 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116039
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116039 | 17632 | nitrate | + | reduction |
116039 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 116039
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
116039 | oxidase | + | |
116039 | alcohol dehydrogenase | - | 1.1.1.1 |
116039 | catalase | + | 1.11.1.6 |
116039 | lysine decarboxylase | - | 4.1.1.18 |
116039 | ornithine decarboxylase | - | 4.1.1.17 |
116039 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116039 | - | + | + | + | + | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | continent | country | origin.country |
---|---|---|---|---|---|
5850 | fast ice | Adelie Island | Australia and Oceania | ||
116039 | Environment, Fast ice | Antarctica | Antarctica | ATA |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Ice
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5850 | 1 | Risk group (German classification) |
116039 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Psychrobacter adeliensis partial 16S rRNA gene, type strain DSM 15333T, clone 1 | HE654007 | 1526 | ena | 219742 |
20218 | Psychrobacter adeliensis partial 16S rRNA gene, type strain DSM 15333T, clone 2 | HE654008 | 1526 | ena | 219742 |
20218 | Psychrobacter adeliensis partial 16S rRNA gene, type strain DSM 15333T, clone 3 | HE654009 | 1526 | ena | 219742 |
20218 | Psychrobacter adeliensis partial 16S rRNA gene, type strain DSM 15333T, clone 4 | HE654010 | 1526 | ena | 219742 |
20218 | Psychrobacter adeliensis partial 16S rRNA gene, type strain DSM 15333T, clone 5 | HE654011 | 1526 | ena | 219742 |
5850 | Psychrobacter adeliae partial 16S rRNA gene, strain SJ14 | AJ539105 | 1457 | ena | 219742 |
External links
@ref: 5850
culture collection no.: DSM 15333, CIP 109037, MTCC 4825
straininfo link
- @ref: 77602
- straininfo: 138034
literature
- topic: Phylogeny
- Pubmed-ID: 15612619
- title: Psychrobacter salsus sp. nov. and Psychrobacter adeliensis sp. nov. isolated from fast ice from Adelie Land, Antarctica.
- authors: Shivaji S, Reddy GS, Raghavan PU, Sarita NB, Delille D
- journal: Syst Appl Microbiol
- DOI: 10.1078/0723202042369956
- year: 2004
- mesh: Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Electrophoresis, Polyacrylamide Gel, Fatty Acids/analysis/isolation & purification, Genes, rRNA/genetics, *Ice, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis/isolation & purification, Psychrobacter/chemistry/*classification/genetics/*isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5850 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15333) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15333 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42078 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6734 | ||||
68382 | Automatically annotated from API zym | |||||
77602 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID138034.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116039 | Curators of the CIP | Collection of Institut Pasteur (CIP 109037) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109037 |