Archive BacDiveID:10.13145/bacdive8191.20221219.7.1

Strain identifier

BacDive ID: 8191

Type strain:

Species: Psychrobacter nivimaris

Strain Designation: 88/2-7

Strain history: <- A. Heuchert; 88/2-7

NCBI tax ID(s): 281738 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 6288

BacDive-ID: 8191

DSM-Number: 16093

keywords: 16S sequence, Bacteria, mesophilic

description: Psychrobacter nivimaris 88/2-7 is a mesophilic bacterium that was isolated from organic particles from a depth of 20 m .

NCBI tax id

NCBI tax id: 281738
Matching level: species

strain history: <- A. Heuchert; 88/2-7

doi: 10.13145/bacdive8191.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter nivimaris
full scientific name: Psychrobacter nivimaris Heuchert et al. 2004

@ref: 6288

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter nivimaris

full scientific name: Psychrobacter nivimaris Heuchert et al. 2004

strain designation: 88/2-7

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.712

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
6288	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33973	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@ref	growth	type	temperature	range
6288	positive	growth	28	mesophilic
33973	positive	growth	25	mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 98.831

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 89.24

Isolation, sampling and environmental information

isolation

@ref: 6288
sample type: organic particles from a depth of 20 m (water column)
geographic location: South Atlantic
continent: Australia and Oceania

isolation source categories

Cat1: #Environmental
Cat2: #Aquatic

taxonmaps

@ref: 69479
File name: preview.99_3600.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_3600&stattab=map
Last taxonomy: Psychrobacter
16S sequence: AJ313425
Sequence Identity:
Total samples: 6652
soil counts: 484
aquatic counts: 3933
animal counts: 2136
plant counts: 99

Safety information

risk assessment

@ref: 6288
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 6288
description: Psychrobacter nivimaris partial 16S rRNA gene, type strain 88/2-7
accession: AJ313425
length: 1498
database: ena
NCBI tax ID: 281738

External links

@ref: 6288

culture collection no.: DSM 16093, NCIMB 13982

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/381876
20218	http://www.straininfo.net/strains/381877

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	15368844	Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica).	Heuchert A, Glockner FO, Amann R, Fischer U	Syst Appl Microbiol	10.1078/0723202041438455	2004	Antarctic Regions, Bacterial Adhesion, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal, Molecular Sequence Data, Moraxellaceae/classification/genetics/physiology, Nucleic Acid Hybridization, Organic Chemicals, Particle Size, Phylogeny, RNA, Ribosomal, 16S, Seawater/*microbiology, Sequence Analysis, DNA	Genetics
Phylogeny	19334602	[Novel halotolerant bacterium from cryopeg in permafrost: description of Psychrobacter muriicola sp. nov].	Shcherbakova VA, Chuvil'skaia NA, Rivkina EM, Pecheritsyna SA, Suetin SV, Laurinavichius KS, Lysenko AM, Gilichinskii DA	Mikrobiologiia		2009	Arctic Regions, Carbohydrate Metabolism, Cell Wall/metabolism, Culture Media, Fatty Acids/analysis/metabolism, Molecular Sequence Data, Moraxellaceae/classification/cytology/genetics/metabolism, Phenotype, Phylogeny, Salinity, Seawater/microbiology, Sequence Homology, Nucleic Acid, Substrate Specificity, Temperature, Water Microbiology	Metabolism
Phylogeny	19502339	Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.007195-0	2009	Animals, Bacterial Typing Techniques, Base Composition, Crustacea/microbiology, DNA Gyrase/genetics, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Psychrobacter/classification/genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Species Specificity	Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
6288	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16093)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-16093
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
33973	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/6145
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)