Strain identifier

BacDive ID: 8191

Type strain: Yes

Species: Psychrobacter nivimaris

Strain Designation: 88/2-7

Strain history: CIP <- 2004, A. Heuchert, Bremen, Germany: strain 88/2-7

NCBI tax ID(s): 281738 (species)

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General

@ref: 6288

BacDive-ID: 8191

DSM-Number: 16093

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Psychrobacter nivimaris 88/2-7 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from organic particles from a depth of 20 m .

NCBI tax id

  • NCBI tax id: 281738
  • Matching level: species

strain history

@refhistory
6288<- A. Heuchert; 88/2-7
121318CIP <- 2004, A. Heuchert, Bremen, Germany: strain 88/2-7

doi: 10.13145/bacdive8191.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter nivimaris
  • full scientific name: Psychrobacter nivimaris Heuchert et al. 2004

@ref: 6288

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter nivimaris

full scientific name: Psychrobacter nivimaris Heuchert et al. 2004

strain designation: 88/2-7

type strain: yes

Morphology

cell morphology

  • @ref: 121318
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6288BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33973MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121318CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6288positivegrowth28mesophilic
33973positivegrowth25mesophilic
121318positivegrowth5-30
121318nogrowth37mesophilic
121318nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121318
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 121318
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12131816947citrate-carbon source
1213184853esculin-hydrolysis
12131817632nitrate-reduction
12131816301nitrite-reduction
12131817632nitrate-respiration

metabolite production

  • @ref: 121318
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12131815688acetoin-
12131817234glucose-

enzymes

@refvalueactivityec
121318oxidase-
121318beta-galactosidase-3.2.1.23
121318alcohol dehydrogenase-1.1.1.1
121318gelatinase-
121318amylase-
121318DNase-
121318caseinase-3.4.21.50
121318catalase+1.11.1.6
121318tween esterase+
121318gamma-glutamyltransferase+2.3.2.2
121318lecithinase+
121318lipase+
121318lysine decarboxylase-4.1.1.18
121318ornithine decarboxylase-4.1.1.17
121318phenylalanine ammonia-lyase-4.3.1.24
121318tryptophan deaminase-
121318urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121318--++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryisolation date
6288organic particles from a depth of 20 m (water column)South AtlanticAustralia and Oceania
121318Marine organic particlesSouthAtlantic Ocean1998

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_3600.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_3600&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AJ313425
  • Sequence Identity:
  • Total samples: 6652
  • soil counts: 484
  • aquatic counts: 3933
  • animal counts: 2136
  • plant counts: 99

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
62881Risk group (German classification)
1213181Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6288
  • description: Psychrobacter nivimaris partial 16S rRNA gene, type strain 88/2-7
  • accession: AJ313425
  • length: 1498
  • database: ena
  • NCBI tax ID: 281738

External links

@ref: 6288

culture collection no.: DSM 16093, NCIMB 13982, CIP 108514

straininfo link

  • @ref: 77594
  • straininfo: 134450

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15368844Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica).Heuchert A, Glockner FO, Amann R, Fischer USyst Appl Microbiol10.1078/07232020414384552004Antarctic Regions, *Bacterial Adhesion, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal, Molecular Sequence Data, Moraxellaceae/*classification/genetics/physiology, Nucleic Acid Hybridization, Organic Chemicals, Particle Size, Phylogeny, RNA, Ribosomal, 16S, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny19334602[Novel halotolerant bacterium from cryopeg in permafrost: description of Psychrobacter muriicola sp. nov].Shcherbakova VA, Chuvil'skaia NA, Rivkina EM, Pecheritsyna SA, Suetin SV, Laurinavichius KS, Lysenko AM, Gilichinskii DAMikrobiologiia2009Arctic Regions, Carbohydrate Metabolism, Cell Wall/metabolism, Culture Media, Fatty Acids/analysis/metabolism, Molecular Sequence Data, Moraxellaceae/*classification/cytology/genetics/metabolism, Phenotype, Phylogeny, *Salinity, Seawater/*microbiology, Sequence Homology, Nucleic Acid, Substrate Specificity, Temperature, *Water MicrobiologyMetabolism
Phylogeny19502339Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan.Romanenko LA, Tanaka N, Frolova GM, Mikhailov VVInt J Syst Evol Microbiol10.1099/ijs.0.007195-02009Animals, Bacterial Typing Techniques, Base Composition, Crustacea/*microbiology, DNA Gyrase/genetics, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Psychrobacter/*classification/genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitle
6288Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16093)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16093
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33973Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6145
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77594Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134450.1StrainInfo: A central database for resolving microbial strain identifiers
121318Curators of the CIPCollection of Institut Pasteur (CIP 108514)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108514