Strain identifier
BacDive ID: 8190
Type strain: 
Species: Psychrobacter alimentarius
Strain Designation: JG102
Strain history: J.-H. Yoon JG-102.
NCBI tax ID(s): 261164 (species)
version 8.1 (current version)
General
@ref: 6252
BacDive-ID: 8190
DSM-Number: 16066
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Psychrobacter alimentarius JG102 is an aerobe, mesophilic bacterium that was isolated from traditional Korean fermented seafood.
NCBI tax id
- NCBI tax id: 261164
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6252 | <- J.-H. Yoon; JG102 |
| 67770 | J.-H. Yoon JG-102. |
doi: 10.13145/bacdive8190.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter alimentarius
- full scientific name: Psychrobacter alimentarius Yoon et al. 2005
@ref: 6252
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter alimentarius
full scientific name: Psychrobacter alimentarius Yoon et al. 2005
strain designation: JG102
type strain: no
Culture and growth conditions
culture medium
- @ref: 6252
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6252 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 6252
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: Q-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 6252 | traditional Korean fermented seafood | Republic of Korea | KOR | Asia |
| 67770 | Squid jeotgal, traditional Korean fermented seafood | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Seafood |
| #Engineered | #Food production | #Fermented |
taxonmaps
- @ref: 69479
- File name: preview.99_4732.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_4732&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: AY513646
- Sequence Identity:
- Total samples: 1363
- soil counts: 114
- aquatic counts: 834
- animal counts: 378
- plant counts: 37
Safety information
risk assessment
- @ref: 6252
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Psychrobacter alimentarius strain JG-102 16S ribosomal RNA gene, partial sequence
- accession: AY513646
- length: 1494
- database: ena
- NCBI tax ID: 261164
GC content
- @ref: 67770
- GC-content: 44
- method: high performance liquid chromatography (HPLC)
External links
@ref: 6252
culture collection no.: DSM 16066, JCM 12316, KCTC 12187
straininfo link
- @ref: 77593
- straininfo: 231875
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6252 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16066) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16066 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 77593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID231875.1 | StrainInfo: A central database for resolving microbial strain identifiers |