Strain identifier

BacDive ID: 8188

Type strain: Yes

Species: Psychrobacter arenosus

Strain Designation: R7

Strain history: CIP <- 2005, DSMZ <- L.A. Romanenko, Academy Sciences, Vladivostok, Russia: strain R7

NCBI tax ID(s): 256326 (species)

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General

@ref: 5890

BacDive-ID: 8188

DSM-Number: 15389

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Psychrobacter arenosus R7 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from bottom sediments.

NCBI tax id

  • NCBI tax id: 256326
  • Matching level: species

strain history

@refhistory
5890<- L. A. Romanenko; R7
116487CIP <- 2005, DSMZ <- L.A. Romanenko, Academy Sciences, Vladivostok, Russia: strain R7

doi: 10.13145/bacdive8188.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter arenosus
  • full scientific name: Psychrobacter arenosus Romanenko et al. 2004

@ref: 5890

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter arenosus

full scientific name: Psychrobacter arenosus Romanenko et al. 2004

strain designation: R7

type strain: yes

Morphology

cell morphology

  • @ref: 116487
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5890BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41944Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116487CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5890positivegrowth25-28mesophilic
41944positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5890bottom sedimentsSea of JapanRussiaRUSAsia
116487Environment, Bottom sedimentsSea of JapanRussian FederationRUSEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Sediment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
58901Risk group (German classification)
1164871Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5890
  • description: Psychrobacter arenosus 16S rRNA gene, type strain R7T
  • accession: AJ609273
  • length: 1491
  • database: ena
  • NCBI tax ID: 256326

External links

@ref: 5890

culture collection no.: DSM 15389, CIP 109036, KMM 3659

straininfo link

  • @ref: 77591
  • straininfo: 127683

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388738Psychrobacter maritimus sp. nov. and Psychrobacter arenosus sp. nov., isolated from coastal sea ice and sediments of the Sea of Japan.Romanenko LA, Lysenko AM, Rohde M, Mikhailov VV, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.63096-02004Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, *Ice, Japan, Molecular Sequence Data, Movement, Phylogeny, Pigments, Biological/biosynthesis, Psychrobacter/*classification/cytology/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/pharmacology, Sequence Analysis, DNA, Temperature, Water MicrobiologyEnzymology
Phylogeny31617840Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua.Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera RInt J Syst Evol Microbiol10.1099/ijsem.0.0037392020Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Psychrobacter/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spheniscidae/*microbiology, Trachea/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitle
5890Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15389)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15389
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41944Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6733
77591Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127683.1StrainInfo: A central database for resolving microbial strain identifiers
116487Curators of the CIPCollection of Institut Pasteur (CIP 109036)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109036