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Strain identifier

BacDive ID: 8186

Type strain: Yes

Species: Psychrobacter submarinus

Strain history: <- P. Schumann <- L. A. Romanenko, KMM

NCBI tax ID(s): 154108 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5237

BacDive-ID: 8186

DSM-Number: 14161

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Psychrobacter submarinus DSM 14161 is a mesophilic bacterium that was isolated from seawater at a depth of 300 m.

NCBI tax id

  • NCBI tax id: 154108
  • Matching level: species

strain history: <- P. Schumann <- L. A. Romanenko, KMM

doi: 10.13145/bacdive8186.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter submarinus
  • full scientific name: Psychrobacter submarinus Romanenko et al. 2002

@ref: 5237

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter submarinus

full scientific name: Psychrobacter submarinus Romanenko et al. 2002

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.768

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5237BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 30.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33154Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
5237positivegrowth25mesophilic
33154positivegrowth25mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.749

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 92.395

Isolation, sampling and environmental information

isolation

  • @ref: 5237
  • sample type: seawater at a depth of 300 m
  • geographic location: Pacific Ocean 12°41'N, 132°38'W
  • latitude: 12.6833
  • longitude: -132.633

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_1920.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_1507;99_1920&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AJ309940
  • Sequence Identity:
  • Total samples: 1598
  • soil counts: 91
  • aquatic counts: 1139
  • animal counts: 350
  • plant counts: 18

Safety information

risk assessment

  • @ref: 5237
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5237
  • description: Psychrobacter submarinus 16S rRNA gene, strain KMM 225
  • accession: AJ309940
  • length: 1428
  • database: ena
  • NCBI tax ID: 154108

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Psychrobacter submarinus Psychrobacter submarinus KMM225GCA_904846685contigncbi154108
66792Psychrobacter submarinus strain Psychrobacter submarinus KMM225154108.8wgspatric154108
66792Escherichia coli SE58GCA_009709945contigpatric562

GC content

  • @ref: 5237
  • GC-content: 46.7

External links

@ref: 5237

culture collection no.: DSM 14161, KMM 225

straininfo link

@refpassport
20218http://www.straininfo.net/strains/303608
20218http://www.straininfo.net/strains/278528

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12148642Psychrobacter submarinus sp. nov. and Psychrobacter marincola sp. nov., psychrophilic halophiles from marine environments.Romanenko LA, Schumann P, Rohde M, Lysenko AM, Mikhailov VV, Stackebrandt EInt J Syst Evol Microbiol10.1099/00207713-52-4-12912002Animals, Bacterial Typing Techniques, *Cold Temperature, DNA, Ribosomal/analysis, Gammaproteobacteria/chemistry/*classification/genetics/physiology, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/*metabolism, Urochordata/*microbiologyGenetics
Pathogenicity33838818Structure and in vitro antiproliferative activity of the acidic capsular polysaccharide from the deep-sea bacterium Psychrobacter submarinus KMM 225(T).Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IVCarbohydr Polym10.1016/j.carbpol.2021.1179412021Aquatic Organisms/chemistry, Carbohydrate Sequence, Cell Proliferation/*drug effects, Cell Survival/drug effects, Humans, K562 Cells, Magnetic Resonance Spectroscopy/methods, Polysaccharides, Bacterial/*chemistry/isolation & purification/*pharmacology, Psychrobacter/*chemistry, Seawater/microbiologyEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5237Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14161)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14161
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33154Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5099
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)