Strain identifier
BacDive ID: 8177
Type strain:
Species: Psychrobacter phenylpyruvicus
Strain history: CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC
NCBI tax ID(s): 1123034 (strain), 29432 (species)
General
@ref: 2943
BacDive-ID: 8177
DSM-Number: 7000
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Psychrobacter phenylpyruvicus CCUG 351 is a mesophilic bacterium that was isolated from blood.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1123034 | strain |
29432 | species |
strain history
@ref | history |
---|---|
2943 | <- NCTC <- K. Bovre <- E. O. King, CDC Atlanta |
67770 | IAM 12282 <-- Y. Nishimura <-- ATCC 23333 <-- K. Bøvre and S. D. Henriksen 2863 <-- E. O. King. |
121798 | CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC |
doi: 10.13145/bacdive8177.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter phenylpyruvicus
- full scientific name: Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996
synonyms
- @ref: 20215
- synonym: Moraxella phenylpyruvica
@ref: 2943
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter phenylpyruvicus
full scientific name: Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 97.026 | |
69480 | 99.998 | negative |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2943 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
41741 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
121798 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2943 | positive | growth | 28 | mesophilic |
41741 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.996 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
68377 | 17634 | D-glucose | - | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
68369 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test |
---|---|---|---|
68377 | 35581 | indole | - |
68369 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | alkaline phosphatase | - | 3.1.3.1 |
68377 | lipase | + | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44170 | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
44170 | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44170 | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44170 | - | - | - | - | - | - | - | + | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2943 | blood |
44170 | Human blood |
67770 | Human blood |
121798 | Blood |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Fluids | #Blood |
#Infection | #Patient |
taxonmaps
- @ref: 69479
- File name: preview.99_108569.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_55695;98_73731;99_108569&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: U46144
- Sequence Identity:
- Total samples: 1148
- soil counts: 183
- aquatic counts: 272
- animal counts: 656
- plant counts: 37
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2943 | 2 | Risk group (German classification) |
121798 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Psychrobacter phenylpyruvicum ATCC 23333 16S ribosomal RNA gene | U46144 | 1433 | ena | 29432 |
20218 | Psychrobacter phenylpyruvicus gene for 16S rRNA, partial sequence, strain: NBRC 102152 | AB681720 | 1460 | ena | 29432 |
20218 | Psychrobacter phenylpyruvicus strain NCTC 10526 16S ribosomal RNA gene, partial sequence | EF012270 | 689 | ena | 29432 |
20218 | M.phenylpyruvica gene for 16S rRNA | X74898 | 718 | ena | 29432 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Psychrobacter phenylpyruvicus Psychrobacter phenylpyruvicus ACAM535 | GCA_904846425 | contig | ncbi | 29432 |
66792 | Psychrobacter phenylpyruvicus DSM 7000 | 1123034.3 | wgs | patric | 1123034 |
66792 | Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 | 1123034.5 | wgs | patric | 1123034 |
66792 | Psychrobacter phenylpyruvicus strain NCTC10526 | 29432.4 | wgs | patric | 29432 |
66792 | Psychrobacter phenylpyruvicus strain Psychrobacter phenylpyruvicus ACAM535 | 29432.6 | wgs | patric | 29432 |
66792 | Psychrobacter phenylpyruvicus DSM 7000 | 2563366723 | draft | img | 1123034 |
66792 | Psychrobacter phenylpyruvicus NBRC 102152 | 2731957640 | draft | img | 1123034 |
66792 | Psychrobacter phenylpyruvicus NCTC 10526 | 2850023359 | draft | img | 29432 |
67770 | Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 | GCA_001591185 | contig | ncbi | 1123034 |
67770 | Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 | GCA_000685805 | scaffold | ncbi | 1123034 |
67770 | Psychrobacter phenylpyruvicus NCTC10526 | GCA_900455955 | contig | ncbi | 29432 |
GC content
- @ref: 67770
- GC-content: 43
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 91.838 | no |
flagellated | no | 92.169 | no |
gram-positive | no | 97.922 | no |
anaerobic | no | 97.508 | no |
aerobic | yes | 84.548 | no |
halophile | yes | 66.728 | no |
spore-forming | no | 96.239 | no |
glucose-util | no | 69.603 | no |
thermophile | no | 98.479 | yes |
glucose-ferment | no | 93.158 | yes |
External links
@ref: 2943
culture collection no.: CCUG 351, CIP 82.27, LMG 5372, CCM 5954, DSM 7000, ATCC 23333, NCTC 10526, JCM 20444, ACAM 535, ACM 886, CDC 2863, IAM 12282, NBRC 102152
straininfo link
- @ref: 77580
- straininfo: 3613
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 8863407 | Novel Psychrobacter species from Antarctic ornithogenic soils. | Bowman JP, Cavanagh J, Austin JJ, Sanderson K | Int J Syst Bacteriol | 10.1099/00207713-46-4-841 | 1996 | Antarctic Regions, Base Composition, Base Sequence, DNA, Ribosomal/chemistry, Humans, Lipids/analysis, Molecular Sequence Data, Moraxella/chemistry/*classification/genetics, Phenotype, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
Phylogeny | 9542079 | Phylogeny of the family Moraxellaceae by 16S rDNA sequence analysis, with special emphasis on differentiation of Moraxella species. | Pettersson B, Kodjo A, Ronaghi M, Uhlen M, Tonjum T | Int J Syst Bacteriol | 10.1099/00207713-48-1-75 | 1998 | DNA Primers, DNA, Bacterial/analysis, Molecular Sequence Data, Moraxella bovis/*classification/*genetics, Moraxella catarrhalis/*chemistry/*genetics, Oligonucleotides, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/*analysis, Species Specificity | Genetics |
Phylogeny | 16989971 | Surgical wound infection associated with Psychrobacter phenylpyruvicus-like organism. | Stepanovic S, Vukovic D, Bedora-Faure M, K'ouas G, Djukic S, Svabic-Vlahovic M, Carlier JP | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2006.08.002 | 2006 | Aged, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Female, Genes, rRNA, Genotype, Humans, Molecular Sequence Data, Moraxellaceae Infections/diagnosis/*microbiology, Phenotype, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Surgical Wound Infection/diagnosis/*microbiology | Genetics |
Phylogeny | 28840795 | Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter. | Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002065 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, France, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 31617840 | Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua. | Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003739 | 2020 | Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Psychrobacter/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spheniscidae/*microbiology, Trachea/*microbiology | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2943 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7000) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7000 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41741 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11296 | ||||
44170 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 351) | https://www.ccug.se/strain?id=351 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
68377 | Automatically annotated from API NH | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77580 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3613.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121798 | Curators of the CIP | Collection of Institut Pasteur (CIP 82.27) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.27 |