Strain identifier

BacDive ID: 8177

Type strain: Yes

Species: Psychrobacter phenylpyruvicus

Strain history: CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2943

BacDive-ID: 8177

DSM-Number: 7000

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Psychrobacter phenylpyruvicus CCUG 351 is a mesophilic bacterium that was isolated from blood.

NCBI tax id

NCBI tax idMatching level
1123034strain
29432species

strain history

@refhistory
2943<- NCTC <- K. Bovre <- E. O. King, CDC Atlanta
67770IAM 12282 <-- Y. Nishimura <-- ATCC 23333 <-- K. Bøvre and S. D. Henriksen 2863 <-- E. O. King.
121798CIP <- 1982, NCTC <- K. Boevre, Oslo, Norway: strain 2863, Moraxella phenylpyruvica <- E. King, CDC

doi: 10.13145/bacdive8177.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter phenylpyruvicus
  • full scientific name: Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996
  • synonyms

    • @ref: 20215
    • synonym: Moraxella phenylpyruvica

@ref: 2943

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter phenylpyruvicus

full scientific name: Psychrobacter phenylpyruvicus (Bøvre and Henriksen 1967) Bowman et al. 1996

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.026
6948099.998negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2943COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
41741MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121798CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
2943positivegrowth28mesophilic
41741positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase+
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44170---+-+--------------
44170--++-+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44170----+---------------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
44170-------+-----

Isolation, sampling and environmental information

isolation

@refsample type
2943blood
44170Human blood
67770Human blood
121798Blood

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_108569.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_55695;98_73731;99_108569&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: U46144
  • Sequence Identity:
  • Total samples: 1148
  • soil counts: 183
  • aquatic counts: 272
  • animal counts: 656
  • plant counts: 37

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29432Risk group (German classification)
1217981Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Psychrobacter phenylpyruvicum ATCC 23333 16S ribosomal RNA geneU461441433ena29432
20218Psychrobacter phenylpyruvicus gene for 16S rRNA, partial sequence, strain: NBRC 102152AB6817201460ena29432
20218Psychrobacter phenylpyruvicus strain NCTC 10526 16S ribosomal RNA gene, partial sequenceEF012270689ena29432
20218M.phenylpyruvica gene for 16S rRNAX74898718ena29432

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Psychrobacter phenylpyruvicus Psychrobacter phenylpyruvicus ACAM535GCA_904846425contigncbi29432
66792Psychrobacter phenylpyruvicus DSM 70001123034.3wgspatric1123034
66792Psychrobacter phenylpyruvicus DSM 7000 = NBRC 1021521123034.5wgspatric1123034
66792Psychrobacter phenylpyruvicus strain NCTC1052629432.4wgspatric29432
66792Psychrobacter phenylpyruvicus strain Psychrobacter phenylpyruvicus ACAM53529432.6wgspatric29432
66792Psychrobacter phenylpyruvicus DSM 70002563366723draftimg1123034
66792Psychrobacter phenylpyruvicus NBRC 1021522731957640draftimg1123034
66792Psychrobacter phenylpyruvicus NCTC 105262850023359draftimg29432
67770Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152GCA_001591185contigncbi1123034
67770Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152GCA_000685805scaffoldncbi1123034
67770Psychrobacter phenylpyruvicus NCTC10526GCA_900455955contigncbi29432

GC content

  • @ref: 67770
  • GC-content: 43
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.838no
flagellatedno92.169no
gram-positiveno97.922no
anaerobicno97.508no
aerobicyes84.548no
halophileyes66.728no
spore-formingno96.239no
glucose-utilno69.603no
thermophileno98.479yes
glucose-fermentno93.158yes

External links

@ref: 2943

culture collection no.: CCUG 351, CIP 82.27, LMG 5372, CCM 5954, DSM 7000, ATCC 23333, NCTC 10526, JCM 20444, ACAM 535, ACM 886, CDC 2863, IAM 12282, NBRC 102152

straininfo link

  • @ref: 77580
  • straininfo: 3613

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity8863407Novel Psychrobacter species from Antarctic ornithogenic soils.Bowman JP, Cavanagh J, Austin JJ, Sanderson KInt J Syst Bacteriol10.1099/00207713-46-4-8411996Antarctic Regions, Base Composition, Base Sequence, DNA, Ribosomal/chemistry, Humans, Lipids/analysis, Molecular Sequence Data, Moraxella/chemistry/*classification/genetics, Phenotype, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyGenetics
Phylogeny9542079Phylogeny of the family Moraxellaceae by 16S rDNA sequence analysis, with special emphasis on differentiation of Moraxella species.Pettersson B, Kodjo A, Ronaghi M, Uhlen M, Tonjum TInt J Syst Bacteriol10.1099/00207713-48-1-751998DNA Primers, DNA, Bacterial/analysis, Molecular Sequence Data, Moraxella bovis/*classification/*genetics, Moraxella catarrhalis/*chemistry/*genetics, Oligonucleotides, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/*analysis, Species SpecificityGenetics
Phylogeny16989971Surgical wound infection associated with Psychrobacter phenylpyruvicus-like organism.Stepanovic S, Vukovic D, Bedora-Faure M, K'ouas G, Djukic S, Svabic-Vlahovic M, Carlier JPDiagn Microbiol Infect Dis10.1016/j.diagmicrobio.2006.08.0022006Aged, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Female, Genes, rRNA, Genotype, Humans, Molecular Sequence Data, Moraxellaceae Infections/diagnosis/*microbiology, Phenotype, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Surgical Wound Infection/diagnosis/*microbiologyGenetics
Phylogeny28840795Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont DInt J Syst Evol Microbiol10.1099/ijsem.0.0020652017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, France, *Phylogeny, Psychrobacter/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny31617840Psychrobacter pygoscelis sp. nov. isolated from the penguin Pygoscelis papua.Kampfer P, Glaeser SP, Irgang R, Fernandez-Negrete G, Poblete-Morales M, Fuentes-Messina D, Cortez-San Martin M, Avendano-Herrera RInt J Syst Evol Microbiol10.1099/ijsem.0.0037392020Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Psychrobacter/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spheniscidae/*microbiology, Trachea/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2943Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7000)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7000
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41741Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11296
44170Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 351)https://www.ccug.se/strain?id=351
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77580Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3613.1StrainInfo: A central database for resolving microbial strain identifiers
121798Curators of the CIPCollection of Institut Pasteur (CIP 82.27)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.27