Strain identifier

BacDive ID: 8172

Type strain: Yes

Species: Moraxella caprae

Strain Designation: 8897

Strain history: CIP <- 1996, A. Kodjo, Lyon Nat. Vet. School, Marcy l'Etoile, France: strain 8897 <- 1988, Y. Richard, Lyon

NCBI tax ID(s): 1122244 (strain), 90240 (species)

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General

@ref: 7937

BacDive-ID: 8172

DSM-Number: 19149

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Moraxella caprae 8897 is an aerobe, mesophilic bacterium that was isolated from goat, nasal cavity.

NCBI tax id

NCBI tax idMatching level
1122244strain
90240species

strain history

@refhistory
7937<- CIP <- A. Kodjo, Ecole Nationale Vétérinaire, Lyon, France; strain 8897 <- Y. Richard
117153CIP <- 1996, A. Kodjo, Lyon Nat. Vet. School, Marcy l'Etoile, France: strain 8897 <- 1988, Y. Richard, Lyon

doi: 10.13145/bacdive8172.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Moraxella
  • species: Moraxella caprae
  • full scientific name: Moraxella caprae Kodjo et al. 1995

@ref: 7937

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Moraxella

species: Moraxella caprae

full scientific name: Moraxella caprae Kodjo et al. 1995

strain designation: 8897

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.994
6948099.976negative
117153nonegativerod-shaped

colony morphology

  • @ref: 117153
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7937TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
7937COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
41277MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
117153CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7937positivegrowth37mesophilic
41277positivegrowth37mesophilic
51440positivegrowth35-37mesophilic
117153positivegrowth37mesophilic
117153nogrowth5psychrophilic
117153nogrowth10psychrophilic
117153nogrowth22psychrophilic
117153nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
51440aerobe
117153obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11715317632nitrate+reduction
11715316301nitrite-reduction
11715335020tributyrin-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11715335581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
117153oxidase+
117153gelatinase-
117153amylase-
117153DNase+
117153caseinase-3.4.21.50
117153lecithinase-
117153lipase-
117153tryptophan deaminase-
117153urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117153--++-+--+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
7937-----------------+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117153-------------------------------------------------+-----------------------------++---------+-------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
7937goat, nasal cavityLyonFranceFRAEurope
51440Caprine nasal cavity,healthy goat [6546]Marcy l'EtoileFranceFRAEurope1988
117153Animal, Goat, nasal cavityLyonFranceFRAEurope1988

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Oral cavity and airways#Airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_2067.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_246;97_671;98_1617;99_2067&stattab=map
  • Last taxonomy: Moraxella
  • 16S sequence: DQ156148
  • Sequence Identity:
  • Total samples: 1156
  • soil counts: 20
  • aquatic counts: 51
  • animal counts: 1083
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79371Risk group (German classification)
1171531Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7937
  • description: UNVERIFIED: Moraxella caprae 16S ribosomal RNA gene, partial sequence
  • accession: DQ156148
  • length: 1489
  • database: ena
  • NCBI tax ID: 90240

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Moraxella caprae NCTC12877GCA_900453285contigncbi90240
66792Moraxella caprae DSM 19149GCA_000426885scaffoldncbi1122244
66792Moraxella caprae DSM 191491122244.3wgspatric1122244
66792Moraxella caprae strain NCTC1287790240.3wgspatric90240
66792Moraxella caprae DSM 191492524614551draftimg1122244

GC content

  • @ref: 7937
  • GC-content: 40-41.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.257no
flagellatedno93.216no
gram-positiveno97.988no
anaerobicno97.639yes
aerobicno85.148no
halophileno75.722no
spore-formingno97.096no
glucose-utilno83.299yes
thermophileno98.621yes
glucose-fermentno91.361yes

External links

@ref: 7937

culture collection no.: DSM 19149, ATCC 700019, CCUG 33296, CIP 104714, NCTC 12877

straininfo link

  • @ref: 77575
  • straininfo: 43731

literature

  • topic: Phylogeny
  • Pubmed-ID: 8590674
  • title: Moraxella caprae sp. nov., a new member of the classical Moraxellae with very close affinity to Moraxella bovis.
  • authors: Kodjo A, Tonjum T, Richard Y, Bovre K
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-45-3-467
  • year: 1995
  • mesh: Animals, Base Composition, DNA, Bacterial/chemistry, Goats/*microbiology, Moraxella/*classification/genetics/metabolism, Moraxella bovis/*genetics/metabolism, Nasal Cavity/microbiology, Nucleic Acid Hybridization, Sequence Homology, Nucleic Acid, Transformation, Bacterial
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
7937Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19149)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19149
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41277Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16653
51440Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33296)https://www.ccug.se/strain?id=33296
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77575Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43731.1StrainInfo: A central database for resolving microbial strain identifiers
117153Curators of the CIPCollection of Institut Pasteur (CIP 104714)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104714