Strain identifier

BacDive ID: 8168

Type strain: Yes

Species: Moraxella caviae

Strain Designation: GP 11

Strain history: CIP <- 1973, ATCC <- M.J. Pelczar, Maryland Univ., College Park, USA: strain GP11, Neisseria caviae

NCBI tax ID(s): 34060 (species)

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General

@ref: 16801

BacDive-ID: 8168

DSM-Number: 23336

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Moraxella caviae GP 11 is a microaerophile, mesophilic bacterium that was isolated from guinea-pig pharynx.

NCBI tax id

  • NCBI tax id: 34060
  • Matching level: species

strain history

@refhistory
16801<- CCUG <- K. Bövre, Univ. of Oslo, Norway <- M. J. Pelczar, Maryland, USA; GP 11
117224CIP <- 1973, ATCC <- M.J. Pelczar, Maryland Univ., College Park, USA: strain GP11, Neisseria caviae

doi: 10.13145/bacdive8168.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Moraxella
  • species: Moraxella caviae
  • full scientific name: Moraxella caviae (Pelczar 1953) Henriksen and Bøvre 1968 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Neisseria caviae

@ref: 16801

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Moraxella

species: Moraxella caviae

full scientific name: Moraxella caviae (Pelczar 1953) Henriksen and Bøvre 1968

strain designation: GP 11

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.934
6948099.992negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16801COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
37618MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serumyesHorse serum (200.000 ml);Columbia agar (39.000 g);Distilled water make up to (1000.000 ml)
117224CIP Medium 4yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4

culture temp

@refgrowthtypetemperaturerange
16801positivegrowth37mesophilic
37618positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16801
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16801catalase+1.11.1.6
16801cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377lipase+
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16801------++-----
16801-------++----

Isolation, sampling and environmental information

isolation

@refsample type
16801guinea-pig pharynx
117224Animal, Guinea pig, pharyngeal region

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Rodentia (Other)
#Host Body-Site#Oral cavity and airways#Throat

taxonmaps

  • @ref: 69479
  • File name: preview.99_6816.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_246;97_268;98_5024;99_6816&stattab=map
  • Last taxonomy: Moraxella caviae subclade
  • 16S sequence: AF005187
  • Sequence Identity:
  • Total samples: 528
  • soil counts: 25
  • aquatic counts: 13
  • animal counts: 487
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
168011Risk group (German classification)
1172241Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Moraxella caviae 16S rRNA gene, partialAJ247220447ena34060
20218Moraxella caviae strain CCUG 355 16S-23S ribosomal RNA intergenic spacer, complete sequenceEU014537609ena34060
20218M.caviae (NCTC 10293) 16S rRNA geneX79220726ena34060
16801Moraxella caviae 16S ribosomal RNA gene, partial sequenceAF0051871446ena34060

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Moraxella caviae NCTC10293GCA_900453175contigncbi34060
66792Moraxella caviae CCUG 355GCA_002014985scaffoldncbi34060
66792Moraxella caviae strain CCUG 35534060.3wgspatric34060
66792Moraxella caviae strain NCTC1029334060.4wgspatric34060
66792Moraxella caviae NCTC 102932902284889draftimg34060
66792Moraxella caviae CCUG 3552905473702draftimg34060

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.928no
gram-positiveno97.17no
anaerobicno98.867no
aerobicno55.568yes
halophileno82.123no
spore-formingno97.297no
glucose-utilno81.531no
thermophileno97.769yes
motileno91.81no
glucose-fermentno92.801no

External links

@ref: 16801

culture collection no.: DSM 23336, ATCC 14659, CCUG 2132, CCUG 355, NCTC 10293, CIP 73.19

straininfo link

  • @ref: 77572
  • straininfo: 36140

literature

  • topic: Phylogeny
  • Pubmed-ID: 36067072
  • title: Moraxella nasovis sp. nov., isolated from a sheep with respiratory disease.
  • authors: Li F, Zhu P, Li Z, Zhao W, Gao H, Hong Q, Song J, Yang S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005511
  • year: 2022
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Moraxella/genetics, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sheep, *Sodium Chloride, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16801Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23336)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23336
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37618Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10672
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77572Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36140.1StrainInfo: A central database for resolving microbial strain identifiers
117224Curators of the CIPCollection of Institut Pasteur (CIP 73.19)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2073.19