Strain identifier

BacDive ID: 8163

Type strain: Yes

Species: Moraxella boevrei

Strain Designation: 88365

Strain history: CIP <- 1996, A. Kodjo, Lyon Nat. Vet. School, Marcy l'Etoile, France: strain 88365 <- 1988, Y. Richard, Lyon, France

NCBI tax ID(s): 1122243 (strain), 346665 (species)

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General

@ref: 5239

BacDive-ID: 8163

DSM-Number: 14165

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Moraxella boevrei 88365 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from goat .

NCBI tax id

NCBI tax idMatching level
1122243strain
346665species

strain history

@refhistory
5239<- CIP <- A. Kodjo; 88365 <- Y. Richard
116829CIP <- 1996, A. Kodjo, Lyon Nat. Vet. School, Marcy l'Etoile, France: strain 88365 <- 1988, Y. Richard, Lyon, France

doi: 10.13145/bacdive8163.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Moraxella
  • species: Moraxella boevrei
  • full scientific name: Moraxella boevrei Kodjo et al. 1997

@ref: 5239

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Moraxella

species: Moraxella boevrei

full scientific name: Moraxella boevrei Kodjo et al. 1997

strain designation: 88365

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.995
116829negativerod-shapedno

colony morphology

@refincubation periodhemolysis ability
52391-2 days
1168291

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5239COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39079MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116829CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5239positivegrowth37mesophilic
39079positivegrowth37mesophilic
52725positivegrowth37mesophilic
116829positivegrowth37mesophilic
116829nogrowth5psychrophilic
116829nogrowth10psychrophilic
116829nogrowth22psychrophilic
116829nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5239microaerophile
52725aerobe
116829obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.979

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11682916947citrate-carbon source
11682917632nitrate+reduction
11682916301nitrite-reduction
11682935020tributyrin-hydrolysis
11682917632nitrate-respiration

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11682935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116829oxidase+
116829amylase-
116829DNase-
116829caseinase+3.4.21.50
116829catalase+1.11.1.6
116829coagulase-
116829tween esterase-
116829lecithinase-
116829lipase+
116829tryptophan deaminase-
116829urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116829--++++----++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5239+-----+--++/---+---+/---+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
5239goat (upper respiratory tract)FranceFRAEurope
52725Goat nasal cavity,healthy animalFranceFRAEurope1988-09-01
116829Animal, Goat, upper respiratory tractFranceFRAEuropeLyon1988

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Oral cavity and airways#Airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_3124.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_1628;97_1948;98_2397;99_3124&stattab=map
  • Last taxonomy: Moraxella boevrei subclade
  • 16S sequence: DQ156147
  • Sequence Identity:
  • Total samples: 2476
  • soil counts: 478
  • aquatic counts: 395
  • animal counts: 1597
  • plant counts: 6

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
52391Risk group (German classification)
1168291Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5239
  • description: Moraxella boevrei 16S ribosomal RNA gene, partial sequence
  • accession: DQ156147
  • length: 1397
  • database: ena
  • NCBI tax ID: 346665

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Moraxella boevrei DSM 14165GCA_000379845scaffoldncbi1122243
66792Moraxella boevrei DSM 141651122243.3wgspatric1122243
66792Moraxella boevrei DSM 141652515154147draftimg1122243

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.194no
flagellatedno93.041no
gram-positiveno98.466no
anaerobicno97.795yes
aerobicno79.974no
halophileno81.077no
spore-formingno97.219no
thermophileno99.49yes
glucose-utilno86.922yes
glucose-fermentno92.94yes

External links

@ref: 5239

culture collection no.: DSM 14165, ATCC 700022, CCUG 35435, CIP 104716, NCTC 12925

straininfo link

  • @ref: 77567
  • straininfo: 45391

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8995812Moraxella boevrei sp. nov., a new Moraxella species found in goats.Kodjo A, Richard Y, Tonjum TInt J Syst Bacteriol10.1099/00207713-47-1-1151997Animals, Bacteriological Techniques, Base Composition, DNA, Bacterial/*analysis, Goats, Moraxella/*classification/genetics/isolation & purification, Moraxella bovis/genetics, Neisseriaceae Infections/*microbiology/veterinary, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal/genetics, Sequence Homology, Nucleic Acid, Transformation, GeneticEnzymology
Phylogeny25267870Faucicola mancuniensis gen. nov., sp. nov., isolated from the human oropharynx.Humphreys GJ, Oates A, Ledder RG, McBain AJInt J Syst Evol Microbiol10.1099/ijs.0.066837-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Humans, Molecular Sequence Data, Moraxellaceae/*classification/genetics/isolation & purification, Oropharynx/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryPathogenicity

Reference

@idauthorscataloguedoi/urltitle
5239Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14165
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39079Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16655
52725Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35435)https://www.ccug.se/strain?id=35435
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77567Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45391.1StrainInfo: A central database for resolving microbial strain identifiers
116829Curators of the CIPCollection of Institut Pasteur (CIP 104716)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104716