Strain identifier
BacDive ID: 8160
Type strain:
Species: Moraxella atlantae
Strain Designation: 5118
Strain history: CIP <- 1982, NCTC <- K. Boevre, Norway <- CDC: strain 5118
NCBI tax ID(s): 34059 (species)
General
@ref: 2942
BacDive-ID: 8160
DSM-Number: 6999
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Moraxella atlantae 5118 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from blood.
NCBI tax id
- NCBI tax id: 34059
- Matching level: species
strain history
@ref | history |
---|---|
2942 | <- NCTC; NCTC 11091 <- K. Bovre; <- E. O. King, CDC, Atlanta; 5118 |
116534 | CIP <- 1982, NCTC <- K. Boevre, Norway <- CDC: strain 5118 |
doi: 10.13145/bacdive8160.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Moraxella
- species: Moraxella atlantae
- full scientific name: Moraxella atlantae Bøvre et al. 1976 (Approved Lists 1980)
@ref: 2942
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Moraxella
species: Moraxella atlantae
full scientific name: Moraxella atlantae Bøvre et al. 1976
strain designation: 5118
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.992 | ||
116534 | negative | rod-shaped | no |
colony morphology
- @ref: 2942
- type of hemolysis: gamma
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2942 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
37722 | MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serum | yes | Horse serum (200.000 ml);Columbia agar (39.000 g);Distilled water make up to (1000.000 ml) | |
116534 | CIP Medium 4 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2942 | positive | growth | 37 | mesophilic |
37722 | positive | growth | 30 | mesophilic |
44895 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44895 | microaerophile |
116534 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.991 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116534 | 17632 | nitrate | - | reduction |
116534 | 16301 | nitrite | - | reduction |
68377 | 17634 | D-glucose | - | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
116534 | 35581 | indole | no |
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
2942 | catalase | + | 1.11.1.6 |
2942 | cytochrome-c oxidase | + | 1.9.3.1 |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | lipase | + | |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
116534 | oxidase | + | |
116534 | catalase | - | 1.11.1.6 |
116534 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116534 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2942 | - | - | - | - | - | - | + | + | - | - | + | - | - |
2942 | - | - | - | - | - | - | - | + | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location | isolation date |
---|---|---|---|---|---|---|
2942 | blood | USA | USA | North America | ||
44895 | Human blood | USA | USA | North America | ||
116534 | Blood | Norway | NOR | Europe | Tromso | 1976 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Fluids | #Blood |
#Infection | #Patient |
taxonmaps
- @ref: 69479
- File name: preview.99_5171.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16381;96_1316;97_1563;98_1902;99_5171&stattab=map
- Last taxonomy: Moraxella atlantae subclade
- 16S sequence: AF005191
- Sequence Identity:
- Total samples: 325
- soil counts: 7
- aquatic counts: 30
- animal counts: 286
- plant counts: 2
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2942 | 2 | Risk group (German classification) |
116534 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 2942
- description: Moraxella atlantae 16S ribosomal RNA gene, partial sequence
- accession: AF005191
- length: 1444
- database: ena
- NCBI tax ID: 34059
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Moraxella atlantae NCTC11091 | GCA_900453305 | contig | ncbi | 34059 |
66792 | Moraxella atlantae CCUG 6415 | GCA_002027585 | scaffold | ncbi | 34059 |
66792 | Moraxella atlantae strain CCUG 6415 | 34059.7 | wgs | patric | 34059 |
66792 | Moraxella atlantae strain NCTC11091 | 34059.8 | wgs | patric | 34059 |
66792 | Moraxella atlantae NCTC 11091 | 2902272189 | draft | img | 34059 |
66792 | Moraxella atlantae CCUG 6415 | 2902295020 | draft | img | 34059 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 94.065 | no |
gram-positive | no | 97.951 | no |
anaerobic | no | 98.947 | yes |
aerobic | no | 80.712 | yes |
halophile | no | 75.835 | no |
spore-forming | no | 96.302 | no |
glucose-util | no | 79.138 | no |
thermophile | no | 98.059 | no |
motile | no | 87.178 | no |
glucose-ferment | no | 93.443 | no |
External links
@ref: 2942
culture collection no.: DSM 6999, ATCC 29525, NCTC 11091, CCUG 6415, CIP 82.25, LMG 5133, IFO 14588, CCM 6072, CCUG 6415A
straininfo link
- @ref: 77564
- straininfo: 3592
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2942 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6999) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6999 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
37722 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11294 | ||||
44895 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 6415) | https://www.ccug.se/strain?id=6415 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68377 | Automatically annotated from API NH | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77564 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3592.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116534 | Curators of the CIP | Collection of Institut Pasteur (CIP 82.25) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.25 |