Strain identifier

BacDive ID: 8160

Type strain: Yes

Species: Moraxella atlantae

Strain Designation: 5118

Strain history: CIP <- 1982, NCTC <- K. Boevre, Norway <- CDC: strain 5118

NCBI tax ID(s): 34059 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2942

BacDive-ID: 8160

DSM-Number: 6999

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Moraxella atlantae 5118 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from blood.

NCBI tax id

  • NCBI tax id: 34059
  • Matching level: species

strain history

@refhistory
2942<- NCTC; NCTC 11091 <- K. Bovre; <- E. O. King, CDC, Atlanta; 5118
116534CIP <- 1982, NCTC <- K. Boevre, Norway <- CDC: strain 5118

doi: 10.13145/bacdive8160.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Moraxella
  • species: Moraxella atlantae
  • full scientific name: Moraxella atlantae Bøvre et al. 1976 (Approved Lists 1980)

@ref: 2942

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Moraxella

species: Moraxella atlantae

full scientific name: Moraxella atlantae Bøvre et al. 1976

strain designation: 5118

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.992
116534negativerod-shapedno

colony morphology

  • @ref: 2942
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2942COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
37722MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serumyesHorse serum (200.000 ml);Columbia agar (39.000 g);Distilled water make up to (1000.000 ml)
116534CIP Medium 4yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4

culture temp

@refgrowthtypetemperaturerange
2942positivegrowth37mesophilic
37722positivegrowth30mesophilic
44895positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44895microaerophile
116534obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.991

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11653417632nitrate-reduction
11653416301nitrite-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11653435581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
2942catalase+1.11.1.6
2942cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377lipase+
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
116534oxidase+
116534catalase-1.11.1.6
116534urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116534-+++-+----++---+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
2942------++--+--
2942-------++--+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
2942bloodUSAUSANorth America
44895Human bloodUSAUSANorth America
116534BloodNorwayNOREuropeTromso1976

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Infection#Patient

taxonmaps

  • @ref: 69479
  • File name: preview.99_5171.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16381;96_1316;97_1563;98_1902;99_5171&stattab=map
  • Last taxonomy: Moraxella atlantae subclade
  • 16S sequence: AF005191
  • Sequence Identity:
  • Total samples: 325
  • soil counts: 7
  • aquatic counts: 30
  • animal counts: 286
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29422Risk group (German classification)
1165341Risk group (French classification)

Sequence information

16S sequences

  • @ref: 2942
  • description: Moraxella atlantae 16S ribosomal RNA gene, partial sequence
  • accession: AF005191
  • length: 1444
  • database: ena
  • NCBI tax ID: 34059

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Moraxella atlantae NCTC11091GCA_900453305contigncbi34059
66792Moraxella atlantae CCUG 6415GCA_002027585scaffoldncbi34059
66792Moraxella atlantae strain CCUG 641534059.7wgspatric34059
66792Moraxella atlantae strain NCTC1109134059.8wgspatric34059
66792Moraxella atlantae NCTC 110912902272189draftimg34059
66792Moraxella atlantae CCUG 64152902295020draftimg34059

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.065no
gram-positiveno97.951no
anaerobicno98.947yes
aerobicno80.712yes
halophileno75.835no
spore-formingno96.302no
glucose-utilno79.138no
thermophileno98.059no
motileno87.178no
glucose-fermentno93.443no

External links

@ref: 2942

culture collection no.: DSM 6999, ATCC 29525, NCTC 11091, CCUG 6415, CIP 82.25, LMG 5133, IFO 14588, CCM 6072, CCUG 6415A

straininfo link

  • @ref: 77564
  • straininfo: 3592

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2942Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6999)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6999
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37722Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11294
44895Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 6415)https://www.ccug.se/strain?id=6415
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3592.1StrainInfo: A central database for resolving microbial strain identifiers
116534Curators of the CIPCollection of Institut Pasteur (CIP 82.25)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.25