Strain identifier

BacDive ID: 8149

Type strain: Yes

Species: Alkanindiges illinoisensis

Strain history: <- B. W. Bogan; MVAB Hex1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5882

BacDive-ID: 8149

DSM-Number: 15370

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Alkanindiges illinoisensis DSM 15370 is a mesophilic, Gram-negative bacterium that was isolated from crude oil-contaminated soil.

NCBI tax id

NCBI tax idMatching level
1120977strain
197183species

strain history

  • @ref: 5882
  • history: <- B. W. Bogan; MVAB Hex1

doi: 10.13145/bacdive8149.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Alkanindiges
  • species: Alkanindiges illinoisensis
  • full scientific name: Alkanindiges illinoisensis Bogan et al. 2003

@ref: 5882

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Alkanindiges

species: Alkanindiges illinoisensis

full scientific name: Alkanindiges illinoisensis Bogan et al. 2003

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.951

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_15370_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_15370_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_15370_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_15370_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 5882
  • name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/381
  • composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381; with strain-specific modifications) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Hexadecane 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

  • @ref: 5882
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

  • @ref: 5882
  • sample type: crude oil-contaminated soil
  • geographic location: Illinois
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Oil (Fuel)
#Engineered#Industrial#Oil reservoir
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 5882
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5882
  • description: Alkane-degrading soil bacterium MVAB Hex1 16S ribosomal RNA gene, complete sequence
  • accession: AF513979
  • length: 1533
  • database: ena
  • NCBI tax ID: 197183

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alkanindiges illinoisensis DSM 15370GCA_000619845scaffoldncbi1120977
66792Alkanindiges illinoisensis DSM 153701120977.3wgspatric1120977
66792Alkanindiges illinoisensis DSM 153702558860994draftimg1120977

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.323no
flagellatedno96.291no
gram-positiveno97.595no
anaerobicno98.472no
halophileno79.129no
spore-formingno97.467no
thermophileno99.762yes
glucose-utilno75.891no
aerobicyes87.523no
glucose-fermentno92.556no

External links

@ref: 5882

culture collection no.: DSM 15370, MVAB Hex1

straininfo link

  • @ref: 77552
  • straininfo: 113591

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130023Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils.Bogan BW, Sullivan WR, Kayser KJ, Derr KD, Aldrich HC, Paterek JRInt J Syst Evol Microbiol10.1099/ijs.0.02568-02003Aerobiosis, Biodegradation, Environmental, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fuel Oils, Hydrocarbons/metabolism, Microscopy, Electron, Molecular Sequence Data, Moraxellaceae/classification/genetics/*isolation & purification/*metabolism, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Squalene/*metabolismMetabolism
Phylogeny33179156Alkanindiges hydrocarboniclasticus sp. nov. Isolated From Crude Oil Contaminated Sands and Emended Description of the Genus Alkanindiges.Yadav S, Kim JS, Lee SSCurr Microbiol10.1007/s00284-020-02266-y2020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Moraxellaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5882Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15370)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15370
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77552Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113591.1StrainInfo: A central database for resolving microbial strain identifiers