Strain identifier
BacDive ID: 8149
Type strain:
Species: Alkanindiges illinoisensis
Strain history: <- B. W. Bogan; MVAB Hex1
NCBI tax ID(s): 1120977 (strain), 197183 (species)
General
@ref: 5882
BacDive-ID: 8149
DSM-Number: 15370
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Alkanindiges illinoisensis DSM 15370 is a mesophilic, Gram-negative bacterium that was isolated from crude oil-contaminated soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1120977 | strain |
197183 | species |
strain history
- @ref: 5882
- history: <- B. W. Bogan; MVAB Hex1
doi: 10.13145/bacdive8149.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Alkanindiges
- species: Alkanindiges illinoisensis
- full scientific name: Alkanindiges illinoisensis Bogan et al. 2003
@ref: 5882
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Alkanindiges
species: Alkanindiges illinoisensis
full scientific name: Alkanindiges illinoisensis Bogan et al. 2003
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.951
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
66793 | EM_DSM_15370_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_15370_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_15370_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_15370_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 5882
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381; with strain-specific modifications) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Hexadecane 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 5882
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 5882
- sample type: crude oil-contaminated soil
- geographic location: Illinois
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | #Oil (Fuel) |
#Engineered | #Industrial | #Oil reservoir |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 5882
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5882
- description: Alkane-degrading soil bacterium MVAB Hex1 16S ribosomal RNA gene, complete sequence
- accession: AF513979
- length: 1533
- database: ena
- NCBI tax ID: 197183
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alkanindiges illinoisensis DSM 15370 | GCA_000619845 | scaffold | ncbi | 1120977 |
66792 | Alkanindiges illinoisensis DSM 15370 | 1120977.3 | wgs | patric | 1120977 |
66792 | Alkanindiges illinoisensis DSM 15370 | 2558860994 | draft | img | 1120977 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 88.323 | no |
flagellated | no | 96.291 | no |
gram-positive | no | 97.595 | no |
anaerobic | no | 98.472 | no |
halophile | no | 79.129 | no |
spore-forming | no | 97.467 | no |
thermophile | no | 99.762 | yes |
glucose-util | no | 75.891 | no |
aerobic | yes | 87.523 | no |
glucose-ferment | no | 92.556 | no |
External links
@ref: 5882
culture collection no.: DSM 15370, MVAB Hex1
straininfo link
- @ref: 77552
- straininfo: 113591
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 13130023 | Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils. | Bogan BW, Sullivan WR, Kayser KJ, Derr KD, Aldrich HC, Paterek JR | Int J Syst Evol Microbiol | 10.1099/ijs.0.02568-0 | 2003 | Aerobiosis, Biodegradation, Environmental, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fuel Oils, Hydrocarbons/metabolism, Microscopy, Electron, Molecular Sequence Data, Moraxellaceae/classification/genetics/*isolation & purification/*metabolism, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Squalene/*metabolism | Metabolism |
Phylogeny | 33179156 | Alkanindiges hydrocarboniclasticus sp. nov. Isolated From Crude Oil Contaminated Sands and Emended Description of the Genus Alkanindiges. | Yadav S, Kim JS, Lee SS | Curr Microbiol | 10.1007/s00284-020-02266-y | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Moraxellaceae/*classification/isolation & purification, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5882 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15370) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15370 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77552 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113591.1 | StrainInfo: A central database for resolving microbial strain identifiers |