Strain identifier

BacDive ID: 8146

Type strain: Yes

Species: Acinetobacter pittii

Strain history: CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- 1969, ATCC <- A.L. Courtieu: strain 57.071.228, Herellea vaginicola

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General

@ref: 18064

BacDive-ID: 8146

DSM-Number: 25618

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Acinetobacter pittii CCUG 61664 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human cerobrospinal fluid.

NCBI tax id

NCBI tax idMatching level
1311774strain
48296species

strain history

@refhistory
18064<- CIP <- M. Piéchaud <- ATCC <- A. Courtieu
121846CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- 1969, ATCC <- A.L. Courtieu: strain 57.071.228, Herellea vaginicola

doi: 10.13145/bacdive8146.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter pittii
  • full scientific name: Acinetobacter pittii Nemec et al. 2011

@ref: 18064

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter pittii

full scientific name: Acinetobacter pittii Nemec et al. 2011

type strain: yes

Morphology

cell morphology

  • @ref: 121846
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refincubation periodhemolysis ability
180641-2 days
1218461

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18064CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42143MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121846CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
18064positivegrowth30mesophilic
42143positivegrowth30mesophilic
62684positivegrowth30mesophilic
121846positivegrowth25-41
121846nogrowth10psychrophilic
121846nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
62684aerobe
121846obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
121846NaClpositivegrowth0-4 %
121846NaClnogrowth6 %
121846NaClnogrowth8 %
121846NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate-reduction
12184616947citrate+carbon source
12184617632nitrate+reduction
12184616301nitrite-reduction
12184617632nitrate-respiration

antibiotic resistance

  • @ref: 121846
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12184635581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12184615688acetoin-
12184617234glucose-

enzymes

@refvalueactivityec
18064catalase+1.11.1.6
18064cytochrome-c oxidase-1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
121846oxidase-
121846beta-galactosidase-3.2.1.23
121846gelatinase-
121846catalase+1.11.1.6
121846gamma-glutamyltransferase+2.3.2.2
121846urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62684-+++-+++--++--------
121846-++++++---++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18064--+------+-----+++++
18064---------+-----+++++
62684--+------+-----+++++-
18064-----+---+-----+++++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121846+-------------------+----------------------+++--++++++-------+++---+--+-++-+++-+++------++++++++++-

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
18064human cerobrospinal fluid
62684Human cerebrospinal fluid1966United KingdomGBREurope
121846Human, Cerobrospinal fluid

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Cerebrospinal fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_95.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_38;98_86;99_95&stattab=map
  • Last taxonomy: Acinetobacter
  • 16S sequence: HQ180184
  • Sequence Identity:
  • Total samples: 46266
  • soil counts: 7889
  • aquatic counts: 12125
  • animal counts: 20278
  • plant counts: 5974

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
180642Risk group (German classification)
1218461Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter genomosp. 3 strain LMG 1035 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY601827619ena48296
20218Acinetobacter genomosp. 3 strain CIP 70.29 16S ribosomal RNA gene, partial sequenceFJ6947581533ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 01HE651687620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 02HE651688620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 03HE651689620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 04HE651690620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 05HE651691620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 08HE651692620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 11HE651693620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 12HE651694620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 14HE651695620ena981326
20218Acinetobacter pittii genomic DNA containing 16S-23S IGS, strain ATCC 19004, clone 15HE651696620ena981326
20218Acinetobacter pittii 16S rRNA gene, strain ATCC 19004HE6519111530ena981326
20218Acinetobacter ATCC19004 16S-23S ribosomal RNA intergenic spacer, including Ile-tRNA and Ala-tRNA genesU60280633ena981326
18064Acinetobacter pittii strain LMG 1035 16S ribosomal RNA gene, partial sequenceHQ1801841392ena48296

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter pittii DSM 25618GCA_000836015contigncbi48296
66792Acinetobacter pittii CIP 70.291217672.3wgspatric1311774
66792Acinetobacter pittii strain DSM 2561848296.27wgspatric48296
66792Acinetobacter pittii strain FDAARGOS 139948296.505completepatric48296
66792Acinetobacter pittii CIP 70.292537561555draftimg1311774
66792Acinetobacter pittii DSM 256182667527755draftimg48296
66792Acinetobacter pittii CIP70.29GCA_024390955contigncbi48296
66792Acinetobacter pittii ATCC 19004 = CIP 70.29GCA_000369045scaffoldncbi1311774

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.203no
anaerobicno98.655yes
halophileno90.487no
spore-formingno96.487no
glucose-utilno74.95yes
aerobicyes95.779yes
motileno89.307no
thermophileno99.879no
flagellatedno94.024no
glucose-fermentno84.061no

External links

@ref: 18064

culture collection no.: CCUG 61664, NCDC KC739, DSM 25618, ATCC 19004, CIP 70.29, LMG 1035, NIPH 519, RUH 2206

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21320596Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU).Nemec A, Krizova L, Maixnerova M, van der Reijden TJ, Deschaght P, Passet V, Vaneechoutte M, Brisse S, Dijkshoorn LRes Microbiol10.1016/j.resmic.2011.02.0062011Acinetobacter/*classification/*genetics/isolation & purification, Acinetobacter baumannii/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Genotype, Molecular Sequence Data, Multilocus Sequence Typing, Phenotype, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics
32582088Phenotypic Variation and Carbapenem Resistance Potential in OXA-499-Producing Acinetobacter pittii.Zhang L, Fu Y, Han X, Xu Q, Weng S, Yan B, Liu L, Hua X, Chen Y, Yu YFront Microbiol10.3389/fmicb.2020.011342020
Phylogeny34633923Acinetobacter geminorum sp. nov., isolated from human throat swabs.Wolf S, Barth-Jakschic E, Birkle K, Bader B, Marschal M, Liese J, Peter S, Oberhettinger PInt J Syst Evol Microbiol10.1099/ijsem.0.0050182021*Acinetobacter/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Nucleic Acid Hybridization, *Pharynx/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18064Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25618)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25618
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42143Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10499
62684Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 61664)https://www.ccug.se/strain?id=61664
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
121846Curators of the CIPCollection of Institut Pasteur (CIP 70.29)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.29