Strain identifier
BacDive ID: 8145
Type strain:
Species: Acinetobacter bereziniae
Strain Designation: 69
Strain history: CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- ATCC <- NCIB, Achromobacter anitrata <- J. Brisou: strain 64, Acinetobacter anitratum
NCBI tax ID(s): 981324 (strain), 106648 (species)
General
@ref: 18038
BacDive-ID: 8145
DSM-Number: 25435
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, human pathogen
description: Acinetobacter bereziniae 69 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human wound.
NCBI tax id
NCBI tax id | Matching level |
---|---|
981324 | strain |
106648 | species |
strain history
@ref | history |
---|---|
18038 | <- LMG <- NCIMB <- J. Brisou |
116789 | CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- ATCC <- NCIB, Achromobacter anitrata <- J. Brisou: strain 64, Acinetobacter anitratum |
doi: 10.13145/bacdive8145.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter bereziniae
- full scientific name: Acinetobacter bereziniae Nemec et al. 2010
@ref: 18038
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter bereziniae
full scientific name: Acinetobacter bereziniae Nemec et al. 2010
strain designation: 69
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility |
---|---|---|---|
29466 | negative | ovoid-shaped | no |
116789 | negative | rod-shaped | no |
colony morphology
@ref | incubation period |
---|---|
18038 | 1-2 days |
116789 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18038 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
42146 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
116789 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18038 | positive | growth | 30 | mesophilic |
29466 | positive | growth | 25-38 | mesophilic |
42146 | positive | growth | 30 | mesophilic |
116789 | positive | growth | 10-37 | |
116789 | no | growth | 41 | thermophilic |
116789 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29466 | aerobe |
116789 | obligate aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116789 | NaCl | positive | growth | 0-2 % |
116789 | NaCl | no | growth | 4 % |
116789 | NaCl | no | growth | 6 % |
116789 | NaCl | no | growth | 8 % |
116789 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29466 | 62064 | 2,3-butanediol | + | carbon source |
29466 | 30089 | acetate | + | carbon source |
29466 | 16449 | alanine | + | carbon source |
29466 | 35391 | aspartate | + | carbon source |
29466 | 16947 | citrate | + | carbon source |
29466 | 16236 | ethanol | + | carbon source |
29466 | 29987 | glutamate | + | carbon source |
29466 | 24996 | lactate | + | carbon source |
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
116789 | 16947 | citrate | + | carbon source |
116789 | 17632 | nitrate | - | reduction |
116789 | 16301 | nitrite | - | reduction |
116789 | 17234 | glucose | +/- | degradation |
116789 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 116789
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
116789 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
116789 | 15688 | acetoin | - | ||
116789 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
18038 | catalase | + | 1.11.1.6 |
18038 | cytochrome-c oxidase | - | 1.9.3.1 |
29466 | catalase | + | 1.11.1.6 |
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
116789 | oxidase | - | |
116789 | beta-galactosidase | - | 3.2.1.23 |
116789 | gelatinase | - | |
116789 | catalase | + | 1.11.1.6 |
116789 | gamma-glutamyltransferase | - | 2.3.2.2 |
116789 | urease | + | 3.5.1.5 |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48486 | - | + | - | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
116789 | - | - | + | + | + | + | - | + | - | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18038 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - |
48486 | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116789 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | + | - | - | - | - | - | - | - | - | + | + | + | - | - | + | - | - | + | - | - | + | + | + | + | + | - | + | + | + | - | - | - | - | - | - | + | + | + | + | + | + | - | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
18038 | human wound |
48486 | Human wound |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Other | #Wound |
taxonmaps
- @ref: 69479
- File name: preview.99_167.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_131;98_147;99_167&stattab=map
- Last taxonomy: Acinetobacter
- 16S sequence: Z93443
- Sequence Identity:
- Total samples: 834
- soil counts: 49
- aquatic counts: 231
- animal counts: 521
- plant counts: 33
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|---|
18038 | yes | yes | 2 | Risk group (German classification) |
116789 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 01s | HE651711 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 03As | HE651712 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 03s | HE651713 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 06s | HE651714 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 10As | HE651715 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 11s | HE651716 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 13s | HE651717 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 14s | HE651718 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 15s | HE651719 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 17s | HE651720 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 18s | HE651721 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 20s | HE651722 | 614 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 02L | HE651723 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 08L | HE651724 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 09L | HE651725 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 11L | HE651726 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 12L | HE651727 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 13L | HE651728 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 14L | HE651729 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 15L | HE651730 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 16L | HE651731 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 17L | HE651732 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 18L | HE651733 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 21L | HE651734 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 22L | HE651735 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 24L | HE651736 | 683 | ena | 106648 |
20218 | Acinetobacter bereziniae 16S rRNA gene, strain ATCC 17924 | HE651922 | 1531 | ena | 106648 |
18038 | Acinetobacter sp. 16S rRNA gene (strain ATCC 17924) | Z93443 | 1418 | ena | 106648 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter bereziniae LMG 1003 = CIP 70.12 | GCA_000368925 | scaffold | ncbi | 981324 |
66792 | Acinetobacter bereziniae LMG 1003 = CIP 70.12 | GCA_000248295 | contig | ncbi | 981324 |
66792 | Acinetobacter bereziniae CIP 70.12 | 1217650.3 | wgs | patric | 981324 |
66792 | Acinetobacter bereziniae LMG 1003 | 981324.3 | wgs | patric | 981324 |
66792 | Acinetobacter bereziniae Brisou 64, LMG 1003 | 2547132297 | draft | img | 981324 |
66792 | Acinetobacter bereziniae Brisou 64, LMG 1003 | 2565956640 | draft | img | 981324 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 91.623 | yes |
flagellated | no | 95.099 | yes |
gram-positive | no | 97.465 | yes |
anaerobic | no | 98.316 | yes |
aerobic | yes | 92.855 | yes |
halophile | no | 91.715 | no |
spore-forming | no | 96.081 | no |
glucose-util | no | 81.314 | yes |
thermophile | no | 99.882 | yes |
glucose-ferment | no | 88.501 | no |
External links
@ref: 18038
culture collection no.: DSM 25435, ATCC 17924, CIP 70.12, LMG 1003, NIPH 521, CCUG 26493, ATCC 13702, NCIMB 9019
straininfo link
- @ref: 77549
- straininfo: 92089
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19661501 | Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively. | Nemec A, Musilek M, Sedo O, De Baere T, Maixnerova M, van der Reijden TJK, Zdrahal Z, Vaneechoutte M, Dijkshoorn L | Int J Syst Evol Microbiol | 10.1099/ijs.0.013656-0 | 2009 | Acinetobacter/*classification/genetics/isolation & purification/physiology, Acinetobacter Infections/*microbiology, Amplified Fragment Length Polymorphism Analysis, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Genotype, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Species Specificity, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Wound Infection/*microbiology | Genetics |
Phylogeny | 27902257 | Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis. | Liu S, Wang Y, Ruan Z, Ma K, Wu B, Xu Y, Wang J, You Y, He M, Hu G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001644 | 2017 | Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Larva/microbiology, Moths/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 29458492 | Acinetobacter piscicola sp. nov., isolated from diseased farmed Murray cod (Maccullochella peelii peelii). | Liu Y, Rao Q, Tu J, Zhang J, Huang M, Hu B, Lin Q, Luo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002608 | 2018 | Acinetobacter/*classification/genetics/isolation & purification, Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/*microbiology, Fishes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
18038 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25435) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25435 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
29466 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 25869 | ||
42146 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10481 | |||||
48486 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 26493) | https://www.ccug.se/strain?id=26493 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
68369 | Automatically annotated from API 20NE | ||||||
68382 | Automatically annotated from API zym | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
77549 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92089.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
116789 | Curators of the CIP | Collection of Institut Pasteur (CIP 70.12) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.12 |