Strain identifier

BacDive ID: 8145

Type strain: Yes

Species: Acinetobacter bereziniae

Strain Designation: 69

Strain history: CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- ATCC <- NCIB, Achromobacter anitrata <- J. Brisou: strain 64, Acinetobacter anitratum

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18038

BacDive-ID: 8145

DSM-Number: 25435

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, human pathogen

description: Acinetobacter bereziniae 69 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human wound.

NCBI tax id

NCBI tax idMatching level
981324strain
106648species

strain history

@refhistory
18038<- LMG <- NCIMB <- J. Brisou
116789CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella glucidolytica var. nonliquefaciens <- ATCC <- NCIB, Achromobacter anitrata <- J. Brisou: strain 64, Acinetobacter anitratum

doi: 10.13145/bacdive8145.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter bereziniae
  • full scientific name: Acinetobacter bereziniae Nemec et al. 2010

@ref: 18038

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter bereziniae

full scientific name: Acinetobacter bereziniae Nemec et al. 2010

strain designation: 69

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
29466negativeovoid-shapedno
116789negativerod-shapedno

colony morphology

@refincubation period
180381-2 days
116789

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18038CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42146MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116789CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
18038positivegrowth30mesophilic
29466positivegrowth25-38mesophilic
42146positivegrowth30mesophilic
116789positivegrowth10-37
116789nogrowth41thermophilic
116789nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29466aerobe
116789obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116789NaClpositivegrowth0-2 %
116789NaClnogrowth4 %
116789NaClnogrowth6 %
116789NaClnogrowth8 %
116789NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29466620642,3-butanediol+carbon source
2946630089acetate+carbon source
2946616449alanine+carbon source
2946635391aspartate+carbon source
2946616947citrate+carbon source
2946616236ethanol+carbon source
2946629987glutamate+carbon source
2946624996lactate+carbon source
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate-reduction
11678916947citrate+carbon source
11678917632nitrate-reduction
11678916301nitrite-reduction
11678917234glucose+/-degradation
11678917632nitrate-respiration

antibiotic resistance

  • @ref: 116789
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11678935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
11678915688acetoin-
11678917234glucose+

enzymes

@refvalueactivityec
18038catalase+1.11.1.6
18038cytochrome-c oxidase-1.9.3.1
29466catalase+1.11.1.6
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116789oxidase-
116789beta-galactosidase-3.2.1.23
116789gelatinase-
116789catalase+1.11.1.6
116789gamma-glutamyltransferase-2.3.2.2
116789urease+3.5.1.5
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
48486-+-+++-+------------
116789--++++-+--++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18038---------------++++--
48486--+------------++++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116789------------------------+-----------------------++---+--------+++--+--+--+++++-+++------++++++--+++

Isolation, sampling and environmental information

isolation

@refsample type
18038human wound
48486Human wound

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_167.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_131;98_147;99_167&stattab=map
  • Last taxonomy: Acinetobacter
  • 16S sequence: Z93443
  • Sequence Identity:
  • Total samples: 834
  • soil counts: 49
  • aquatic counts: 231
  • animal counts: 521
  • plant counts: 33

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
18038yesyes2Risk group (German classification)
1167891Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 01sHE651711614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 03AsHE651712614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 03sHE651713614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 06sHE651714614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 10AsHE651715614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 11sHE651716614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 13sHE651717614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 14sHE651718614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 15sHE651719614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 17sHE651720614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 18sHE651721614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 20sHE651722614ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 02LHE651723683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 08LHE651724683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 09LHE651725683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 11LHE651726683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 12LHE651727683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 13LHE651728683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 14LHE651729683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 15LHE651730683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 16LHE651731683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 17LHE651732683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 18LHE651733683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 21LHE651734683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 22LHE651735683ena106648
20218Acinetobacter bereziniae genomic DNA containing 16S-23S IGS, strain ATCC 17924, clone 24LHE651736683ena106648
20218Acinetobacter bereziniae 16S rRNA gene, strain ATCC 17924HE6519221531ena106648
18038Acinetobacter sp. 16S rRNA gene (strain ATCC 17924)Z934431418ena106648

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter bereziniae LMG 1003 = CIP 70.12GCA_000368925scaffoldncbi981324
66792Acinetobacter bereziniae LMG 1003 = CIP 70.12GCA_000248295contigncbi981324
66792Acinetobacter bereziniae CIP 70.121217650.3wgspatric981324
66792Acinetobacter bereziniae LMG 1003981324.3wgspatric981324
66792Acinetobacter bereziniae Brisou 64, LMG 10032547132297draftimg981324
66792Acinetobacter bereziniae Brisou 64, LMG 10032565956640draftimg981324

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.623yes
flagellatedno95.099yes
gram-positiveno97.465yes
anaerobicno98.316yes
aerobicyes92.855yes
halophileno91.715no
spore-formingno96.081no
glucose-utilno81.314yes
thermophileno99.882yes
glucose-fermentno88.501no

External links

@ref: 18038

culture collection no.: DSM 25435, ATCC 17924, CIP 70.12, LMG 1003, NIPH 521, CCUG 26493, ATCC 13702, NCIMB 9019

straininfo link

  • @ref: 77549
  • straininfo: 92089

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19661501Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively.Nemec A, Musilek M, Sedo O, De Baere T, Maixnerova M, van der Reijden TJK, Zdrahal Z, Vaneechoutte M, Dijkshoorn LInt J Syst Evol Microbiol10.1099/ijs.0.013656-02009Acinetobacter/*classification/genetics/isolation & purification/physiology, Acinetobacter Infections/*microbiology, Amplified Fragment Length Polymorphism Analysis, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Genotype, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Species Specificity, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Wound Infection/*microbiologyGenetics
Phylogeny27902257Acinetobacter larvae sp. nov., isolated from the larval gut of Omphisa fuscidentalis.Liu S, Wang Y, Ruan Z, Ma K, Wu B, Xu Y, Wang J, You Y, He M, Hu GInt J Syst Evol Microbiol10.1099/ijsem.0.0016442017Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Larva/microbiology, Moths/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29458492Acinetobacter piscicola sp. nov., isolated from diseased farmed Murray cod (Maccullochella peelii peelii).Liu Y, Rao Q, Tu J, Zhang J, Huang M, Hu B, Lin Q, Luo TInt J Syst Evol Microbiol10.1099/ijsem.0.0026082018Acinetobacter/*classification/genetics/isolation & purification, Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/*microbiology, Fishes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18038Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25435)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25435
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29466Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125869
42146Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10481
48486Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 26493)https://www.ccug.se/strain?id=26493
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77549Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92089.1StrainInfo: A central database for resolving microbial strain identifiers
116789Curators of the CIPCollection of Institut Pasteur (CIP 70.12)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.12