Strain identifier

BacDive ID: 8143

Type strain: Yes

Species: Acinetobacter soli

Strain Designation: B1, CR11, IBFC2009

Strain history: CIP <- 2011, KCTC <- CN Seong, Sunchon Univ., Sunchon, Korea: strain B1

NCBI tax ID(s): 1217676 (strain), 487316 (species)

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General

@ref: 16634

BacDive-ID: 8143

DSM-Number: 22956

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, rod-shaped

description: Acinetobacter soli B1 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from From soil of bamboo plantation.

NCBI tax id

NCBI tax idMatching level
1217676strain
487316species

strain history

@refhistory
16634<- JCM/RIKEN <- C. N. Seong; B1
67770C. N. Seong B1.
67771<- S Duan, Inst. Bast Fiber Crops, CAS, China
122654CIP <- 2011, KCTC <- CN Seong, Sunchon Univ., Sunchon, Korea: strain B1

doi: 10.13145/bacdive8143.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter soli
  • full scientific name: Acinetobacter soli Kim et al. 2009

@ref: 16634

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter soli

full scientific name: Acinetobacter soli Kim et al. 2009

strain designation: B1, CR11, IBFC2009

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedno
67771negative
122654oval-shapednonegative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16634TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
16634R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
16634NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
42136MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122654CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16634positivegrowth28mesophilic
42136positivegrowth30mesophilic
61806positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
61806aerobe
67771aerobe
122654obligate aerobe

spore formation

  • @ref: 67771
  • spore formation: no

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12265417632nitrate-reduction
12265416301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12265435581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
122654oxidase-
122654catalase+1.11.1.6
122654urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
61806-+-++++-------------
122654-++++++---+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16634----+---+-----++++++-
61806----+---+-----++++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling date
67771From soil of bamboo plantationHangzhouChinaCHNAsia
16634forest soilMt. Baekwoon near Gwangyang (35°06' N, 127°37' E)Republic of KoreaKORAsia35.1127.617
61806Forest soilMt. BaekwoonRepublic of KoreaKORAsia2007
67770Forest soil collected from the Mt. BaekwoonRepublic of KoreaKORAsia
122654Environment, Soil, forestMount BaekwoonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
166342Risk group (German classification)
1226541Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16634Acinetobacter soli strain B1 16S ribosomal RNA gene, partial sequenceEU2901551422ena487316
67771Sphingobacterium bambusae strain IBFC2009 16S ribosomal RNA gene, partial sequenceGQ3399101453ena662858

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter soli CIP 110264GCA_000368705scaffoldncbi1217676
66792Acinetobacter soli CIP 1102641217676.3wgspatric1217676
66792Acinetobacter soli strain KCTC 22184487316.5wgspatric487316
66792Acinetobacter soli CIP 1102642565956696draftimg1217676
66792Acinetobacter soli KCTC 221842660238584draftimg487316
67770Acinetobacter soli KCTC 22184GCA_000760595contigncbi487316

GC content

@refGC-contentmethod
1663444.1
6777044.1thermal denaturation, midpoint method (Tm)
6777141.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.12yes
flagellatedno95.378no
gram-positiveno97.911no
anaerobicno98.235no
aerobicyes92.848yes
halophileno79.759no
spore-formingno97.537no
thermophileno99.812yes
glucose-utilno53.367yes
glucose-fermentno89.458yes

External links

@ref: 16634

culture collection no.: DSM 22956, JCM 15062, KCTC 22184, CCUG 59023, KCTC 22814, CIP 110264, CCTCC AB 209162

straininfo link

  • @ref: 77547
  • straininfo: 363391

literature

  • topic: Phylogeny
  • Pubmed-ID: 18758729
  • title: Acinetobacter soli sp. nov., isolated from forest soil.
  • authors: Kim D, Baik KS, Kim MS, Park SC, Kim SS, Rhee MS, Kwak YS, Seong CN
  • journal: J Microbiol
  • DOI: 10.1007/s12275-008-0118-y
  • year: 2008
  • mesh: Acinetobacter/*classification/genetics/*isolation & purification/metabolism, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Trees/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
16634Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22956)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22956
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42136Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8104
61806Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59023)https://www.ccug.se/strain?id=59023
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
77547Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363391.1StrainInfo: A central database for resolving microbial strain identifiers
122654Curators of the CIPCollection of Institut Pasteur (CIP 110264)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110264