Strain identifier

BacDive ID: 8142

Type strain: Yes

Species: Acinetobacter gyllenbergii

Strain Designation: 1271

Strain history: CIP <- 2011, CCUG <- 2005, CCM <- A. Lampe, Leiden Univ., The Netherlands: strain 1271

NCBI tax ID(s): 134534 (species)

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General

@ref: 16475

BacDive-ID: 8142

DSM-Number: 22705

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Acinetobacter gyllenbergii 1271 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from urine of a patient.

NCBI tax id

  • NCBI tax id: 134534
  • Matching level: species

strain history

@refhistory
16475<- CCUG <- A. Nemec, Centre of Epidemiology and Microbiology, Natl. Inst. Public Health, Prague, Czech Republic <- A. Lampe, Leiden Univ. Medical Center, Netherlands
119757CIP <- 2011, CCUG <- 2005, CCM <- A. Lampe, Leiden Univ., The Netherlands: strain 1271

doi: 10.13145/bacdive8142.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter gyllenbergii
  • full scientific name: Acinetobacter gyllenbergii Nemec et al. 2009

@ref: 16475

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter gyllenbergii

full scientific name: Acinetobacter gyllenbergii Nemec et al. 2009

strain designation: 1271

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
28906negativeovoid-shapedno
119757negativeoval-shapedno

colony morphology

  • @ref: 16475
  • type of hemolysis: alpha/beta
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16475COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16475TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42130MEDIUM 30 - for Gemella haemolysansyesDistilled water make up to (1000.000 ml);Horse blood (100.000 ml);Brainheart infusion agar (52.000 g)
119757CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119757CIP Medium 30yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=30

culture temp

@refgrowthtypetemperaturerange
16475positivegrowth37mesophilic
28906positivegrowth25-37mesophilic
28906positiveoptimum31mesophilic
42130positivegrowth30mesophilic
59114positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28906aerobe
59114aerobe
119757obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
28906178794-hydroxybenzoate+carbon source
2890630089acetate+carbon source
2890617128adipate+carbon source
2890616449alanine+carbon source
2890629016arginine+carbon source
2890616947citrate+carbon source
2890616236ethanol+carbon source
289065291gelatin+carbon source
2890627570histidine+carbon source
2890624996lactate+carbon source
2890625017leucine+carbon source
2890625115malate+carbon source
2890615792malonate+carbon source
2890618257ornithine+carbon source
2890618401phenylacetate+carbon source
2890628044phenylalanine+carbon source
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11975717632nitrate-reduction
11975716301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11975735581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16475catalase+1.11.1.6
16475cytochrome-c oxidase-1.9.3.1
28906catalase+1.11.1.6
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
119757oxidase-
119757catalase+1.11.1.6
119757urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119757--+++++---++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16475------+--------+++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
16475urine of a patientLeiden University HospitalNetherlandsNLDEurope
59114Human urineLeidenNetherlandsNLDEurope1978
119757Human, UrineLeidenNetherlandsNLDEurope1978

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Urine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
164752Risk group (German classification)
1197571Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16475
  • description: Acinetobacter gyllenbergii 16S rRNA gene, type strain RUH 422T
  • accession: AJ293694
  • length: 1456
  • database: ena
  • NCBI tax ID: 134534

External links

@ref: 16475

culture collection no.: DSM 22705, CCM 7267, CCUG 51248, NIPH 2150, RUH 422, CIP 110306

straininfo link

  • @ref: 77546
  • straininfo: 360499

literature

  • topic: Phylogeny
  • Pubmed-ID: 19126734
  • title: Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans.
  • authors: Nemec A, Musilek M, Maixnerova M, De Baere T, van der Reijden TJ, Vaneechoutte M, Dijkshoorn L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.001230-0
  • year: 2009
  • mesh: Acinetobacter/classification/genetics/growth & development/*isolation & purification, Acinetobacter Infections/*microbiology, Animals, Bacterial Typing Techniques, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, DNA-Directed RNA Polymerases/genetics, Environmental Microbiology, Genes, rRNA, *Hemolysis, Humans, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNA, Species Specificity
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16475Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22705)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22705
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28906Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2534528776041
42130Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8151
59114Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51248)https://www.ccug.se/strain?id=51248
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
77546Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID360499.1StrainInfo: A central database for resolving microbial strain identifiers
119757Curators of the CIPCollection of Institut Pasteur (CIP 110306)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110306