Strain identifier
BacDive ID: 8139
Type strain:
Species: Acinetobacter parvus
Strain history: CIP <- 2003, CCM <- A. Nemec <- P. Jezek
NCBI tax ID(s): 981333 (strain), 134533 (species)
General
@ref: 6525
BacDive-ID: 8139
DSM-Number: 16617
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative
description: Acinetobacter parvus DSM 16617 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from ear from patient with Otitis media.
NCBI tax id
NCBI tax id | Matching level |
---|---|
981333 | strain |
134533 | species |
strain history
@ref | history |
---|---|
6525 | <- LMG <- L. Dijkshoorn, Univ. Leiden <- A. Nemec, Prague <- P. Jezek, Pribam, CZ |
121605 | CIP <- 2003, CCM <- A. Nemec <- P. Jezek |
doi: 10.13145/bacdive8139.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter parvus
- full scientific name: Acinetobacter parvus Nemec et al. 2003
@ref: 6525
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter parvus
full scientific name: Acinetobacter parvus Nemec et al. 2003
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.959 | ||
121605 | negative | oval-shaped | no |
colony morphology
@ref | type of hemolysis |
---|---|
6525 | gamma |
121605 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6525 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
42157 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
121605 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6525 | positive | growth | 28 | mesophilic |
42157 | positive | growth | 30 | mesophilic |
121605 | positive | growth | 10-37 | |
121605 | no | growth | 41 | thermophilic |
121605 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 121605
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.744 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
121605 | NaCl | no | growth | 0 % |
121605 | NaCl | no | growth | 2 % |
121605 | NaCl | no | growth | 4 % |
121605 | NaCl | no | growth | 6 % |
121605 | NaCl | no | growth | 8 % |
121605 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
121605 | 16947 | citrate | - | carbon source |
121605 | 17632 | nitrate | + | reduction |
121605 | 16301 | nitrite | - | reduction |
121605 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 121605
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
121605 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
121605 | 15688 | acetoin | - | ||
121605 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
6525 | catalase | + | 1.11.1.6 |
6525 | cytochrome-c oxidase | - | 1.9.3.1 |
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
121605 | oxidase | - | |
121605 | beta-galactosidase | - | 3.2.1.23 |
121605 | alcohol dehydrogenase | - | 1.1.1.1 |
121605 | gelatinase | - | |
121605 | catalase | + | 1.11.1.6 |
121605 | gamma-glutamyltransferase | - | 2.3.2.2 |
121605 | lysine decarboxylase | - | 4.1.1.18 |
121605 | ornithine decarboxylase | - | 4.1.1.17 |
121605 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121605 | - | - | + | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6525 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | |
6525 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121605 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|---|
6525 | ear from patient with Otitis media | Otitis media | Pribam | Czech Republic | CZE | Europe | |
121605 | Ear, swab | Pribram | Czech Republic | CZE | Europe | 1996 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Infection | #Patient | |
#Host Body-Site | #Organ | #Ear |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6525 | 2 | Risk group (German classification) |
121605 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter parvus strain DSM16617 16S ribosomal RNA gene, partial sequence | EF611412 | 452 | ena | 981333 |
6525 | Acinetobacter sp. phenon 4 16S rRNA gene, strain LUH4616 (Aci602) | AJ293691 | 1465 | ena | 134533 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter parvus DSM 16617 = CIP 108168 | GCA_000368025 | scaffold | ncbi | 981333 |
66792 | Acinetobacter parvus DSM 16617 = CIP 108168 | GCA_000248155 | contig | ncbi | 981333 |
66792 | Acinetobacter parvus DSM 16617 = CIP 108168 | 981333.9 | wgs | patric | 981333 |
66792 | Acinetobacter parvus DSM 16617 = CIP 108168 | 981333.4 | wgs | patric | 981333 |
66792 | Acinetobacter parvus NIPH 384, DSM 16617 | 2547132305 | draft | img | 981333 |
66792 | Acinetobacter parvus NIPH 384, DSM 16617 | 2565956642 | draft | img | 981333 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 91.646 | no |
flagellated | no | 95.997 | no |
gram-positive | no | 97.774 | no |
anaerobic | no | 97.655 | no |
aerobic | yes | 89.9 | no |
halophile | no | 92.758 | no |
spore-forming | no | 96.238 | no |
thermophile | no | 99.772 | yes |
glucose-util | no | 91.551 | no |
glucose-ferment | no | 92.183 | yes |
External links
@ref: 6525
culture collection no.: DSM 16617, CCM 7030, CCUG 48866, LMG 21765, NIPH 384, LUH 4616, CIP 108168
straininfo link
- @ref: 77543
- straininfo: 127974
literature
- topic: Phylogeny
- Pubmed-ID: 13130049
- title: Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens.
- authors: Nemec A, Dijkshoorn L, Cleenwerck I, De Baere T, Janssens D, van der Reijden TJK, Jezek P, Vaneechoutte M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02631-0
- year: 2003
- mesh: Acinetobacter/*classification/genetics/*isolation & purification/metabolism, Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Dogs, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6525 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16617) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16617 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42157 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5760 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77543 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID127974.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121605 | Curators of the CIP | Collection of Institut Pasteur (CIP 108168) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108168 |