Strain identifier

BacDive ID: 8139

Type strain: Yes

Species: Acinetobacter parvus

Strain history: CIP <- 2003, CCM <- A. Nemec <- P. Jezek

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6525

BacDive-ID: 8139

DSM-Number: 16617

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative

description: Acinetobacter parvus DSM 16617 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from ear from patient with Otitis media.

NCBI tax id

NCBI tax idMatching level
981333strain
134533species

strain history

@refhistory
6525<- LMG <- L. Dijkshoorn, Univ. Leiden <- A. Nemec, Prague <- P. Jezek, Pribam, CZ
121605CIP <- 2003, CCM <- A. Nemec <- P. Jezek

doi: 10.13145/bacdive8139.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter parvus
  • full scientific name: Acinetobacter parvus Nemec et al. 2003

@ref: 6525

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter parvus

full scientific name: Acinetobacter parvus Nemec et al. 2003

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.959
121605negativeoval-shapedno

colony morphology

@reftype of hemolysis
6525gamma
121605

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6525CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42157MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121605CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6525positivegrowth28mesophilic
42157positivegrowth30mesophilic
121605positivegrowth10-37
121605nogrowth41thermophilic
121605nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121605
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.744

halophily

@refsaltgrowthtested relationconcentration
121605NaClnogrowth0 %
121605NaClnogrowth2 %
121605NaClnogrowth4 %
121605NaClnogrowth6 %
121605NaClnogrowth8 %
121605NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12160516947citrate-carbon source
12160517632nitrate+reduction
12160516301nitrite-reduction
12160517632nitrate-respiration

antibiotic resistance

  • @ref: 121605
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12160535581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12160515688acetoin-
12160517234glucose-

enzymes

@refvalueactivityec
6525catalase+1.11.1.6
6525cytochrome-c oxidase-1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
121605oxidase-
121605beta-galactosidase-3.2.1.23
121605alcohol dehydrogenase-1.1.1.1
121605gelatinase-
121605catalase+1.11.1.6
121605gamma-glutamyltransferase-2.3.2.2
121605lysine decarboxylase-4.1.1.18
121605ornithine decarboxylase-4.1.1.17
121605urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121605--++-+-----+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6525---------------+----
6525---------------+-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121605----------------------------------------------------------------------------++---------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
6525ear from patient with Otitis mediaOtitis mediaPribamCzech RepublicCZEEurope
121605Ear, swabPribramCzech RepublicCZEEurope1996

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host Body-Site#Organ#Ear

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
65252Risk group (German classification)
1216051Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter parvus strain DSM16617 16S ribosomal RNA gene, partial sequenceEF611412452ena981333
6525Acinetobacter sp. phenon 4 16S rRNA gene, strain LUH4616 (Aci602)AJ2936911465ena134533

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter parvus DSM 16617 = CIP 108168GCA_000368025scaffoldncbi981333
66792Acinetobacter parvus DSM 16617 = CIP 108168GCA_000248155contigncbi981333
66792Acinetobacter parvus DSM 16617 = CIP 108168981333.9wgspatric981333
66792Acinetobacter parvus DSM 16617 = CIP 108168981333.4wgspatric981333
66792Acinetobacter parvus NIPH 384, DSM 166172547132305draftimg981333
66792Acinetobacter parvus NIPH 384, DSM 166172565956642draftimg981333

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.646no
flagellatedno95.997no
gram-positiveno97.774no
anaerobicno97.655no
aerobicyes89.9no
halophileno92.758no
spore-formingno96.238no
thermophileno99.772yes
glucose-utilno91.551no
glucose-fermentno92.183yes

External links

@ref: 6525

culture collection no.: DSM 16617, CCM 7030, CCUG 48866, LMG 21765, NIPH 384, LUH 4616, CIP 108168

straininfo link

  • @ref: 77543
  • straininfo: 127974

literature

  • topic: Phylogeny
  • Pubmed-ID: 13130049
  • title: Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens.
  • authors: Nemec A, Dijkshoorn L, Cleenwerck I, De Baere T, Janssens D, van der Reijden TJK, Jezek P, Vaneechoutte M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02631-0
  • year: 2003
  • mesh: Acinetobacter/*classification/genetics/*isolation & purification/metabolism, Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Dogs, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6525Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16617)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16617
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42157Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5760
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77543Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127974.1StrainInfo: A central database for resolving microbial strain identifiers
121605Curators of the CIPCollection of Institut Pasteur (CIP 108168)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108168