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Strain identifier

BacDive ID: 8139

Type strain: Yes

Species: Acinetobacter parvus

Strain history: <- LMG <- L. Dijkshoorn, Univ. Leiden <- A. Nemec, Prague <- P. Jezek, Pribam, CZ

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6525

BacDive-ID: 8139

DSM-Number: 16617

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acinetobacter parvus DSM 16617 is a mesophilic bacterium that was isolated from ear from patient with Otitis media.

NCBI tax id

NCBI tax idMatching level
981333strain
134533species

strain history: <- LMG <- L. Dijkshoorn, Univ. Leiden <- A. Nemec, Prague <- P. Jezek, Pribam, CZ

doi: 10.13145/bacdive8139.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter parvus
  • full scientific name: Acinetobacter parvus Nemec et al. 2003

@ref: 6525

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter parvus

full scientific name: Acinetobacter parvus Nemec et al. 2003

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.239

colony morphology

  • @ref: 6525
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6525CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42157MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6525positivegrowth28mesophilic
42157positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 92.087

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.372

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
6525catalase+1.11.1.6
6525cytochrome-c oxidase-1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6525---------------+----
6525---------------+-----

Isolation, sampling and environmental information

isolation

  • @ref: 6525
  • sample type: ear from patient with Otitis media
  • host species: Otitis media
  • geographic location: Pribam
  • country: Czech Republic
  • origin.country: CZE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host Body-Site#Organ#Ear

Safety information

risk assessment

  • @ref: 6525
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter parvus strain DSM16617 16S ribosomal RNA gene, partial sequenceEF611412452ena981333
6525Acinetobacter sp. phenon 4 16S rRNA gene, strain LUH4616 (Aci602)AJ2936911465ena134533

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter parvus DSM 16617 = CIP 108168 CIP 108168GCA_000368025scaffoldncbi981333
66792Acinetobacter parvus DSM 16617 = CIP 108168 DSM 16617GCA_000248155contigncbi981333
66792Acinetobacter parvus DSM 16617 = CIP 108168981333.9wgspatric981333
66792Acinetobacter parvus DSM 16617 = CIP 108168981333.4wgspatric981333
66792Acinetobacter parvus NIPH 384, DSM 166172547132305draftimg981333
66792Acinetobacter parvus NIPH 384, DSM 166172565956642draftimg981333
66792Flavobacteriales bacterium UBA4467 UBA4467GCA_002390065scaffoldpatric1951017
66792Flavobacteriaceae bacterium UBA4464 UBA4464GCA_002390125scaffoldpatric1951849

External links

@ref: 6525

culture collection no.: DSM 16617, CCM 7030, CCUG 48866, LMG 21765, NIPH 384, LUH 4616

straininfo link

@refpassport
20218http://www.straininfo.net/strains/379460
20218http://www.straininfo.net/strains/371162
20218http://www.straininfo.net/strains/389704
20218http://www.straininfo.net/strains/371163
20218http://www.straininfo.net/strains/371165

literature

  • topic: Phylogeny
  • Pubmed-ID: 13130049
  • title: Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens.
  • authors: Nemec A, Dijkshoorn L, Cleenwerck I, De Baere T, Janssens D, van der Reijden TJK, Jezek P, Vaneechoutte M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02631-0
  • year: 2003
  • mesh: Acinetobacter/*classification/genetics/*isolation & purification/metabolism, Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Dogs, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6525Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16617)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16617
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42157Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5760
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)