Strain identifier

BacDive ID: 8138

Type strain: Yes

Species: Acinetobacter seohaensis

Strain Designation: SW-100

Strain history: CIP <- 2013, KCTC <- JH Yoon, KRIBB

NCBI tax ID(s): 281376 (species)

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General

@ref: 6359

BacDive-ID: 8138

DSM-Number: 16313

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Acinetobacter seohaensis SW-100 is an aerobe, mesophilic bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 281376
  • Matching level: species

strain history

@refhistory
6359<- J.-H. Yoon; SW-100
335542013, KCTC
115968CIP <- 2013, KCTC <- JH Yoon, KRIBB

doi: 10.13145/bacdive8138.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter seohaensis
  • full scientific name: Acinetobacter seohaensis Yoon et al. 2007

@ref: 6359

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter seohaensis

full scientific name: Acinetobacter seohaensis Yoon et al. 2007

strain designation: SW-100

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.276
6948099.994negative

colony morphology

  • @ref: 6359
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6359CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
33554MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
115968CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6359positivegrowth30mesophilic
33554positivegrowth30mesophilic
60983positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60983
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.994

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6359sea waterYellow Sea, Wando-gunRepublic of KoreaKORAsia
60983SeawaterYellow SeaRepublic of KoreaKORAsia
115968Environment, Sea waterYellow seaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_2747.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_538;97_620;98_714;99_2747&stattab=map
  • Last taxonomy: Acinetobacter seohaensis
  • 16S sequence: AY633608
  • Sequence Identity:
  • Total samples: 5231
  • soil counts: 359
  • aquatic counts: 2684
  • animal counts: 2024
  • plant counts: 164

Safety information

risk assessment

  • @ref: 115968
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6359
  • description: Acinetobacter seohaensis 16S ribosomal RNA gene, partial sequence
  • accession: AY633608
  • length: 1493
  • database: ena
  • NCBI tax ID: 281376

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter seohaensis DSM 16313GCA_018403785contigncbi281376
66792Acinetobacter seohaensis strain DSM 16313281376.12wgspatric281376

GC content

  • @ref: 6359
  • GC-content: 41.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.703no
gram-positiveno98.102no
anaerobicno96.717yes
halophileno86.463no
spore-formingno96.673no
glucose-utilno92.712no
flagellatedno95.281no
aerobicyes89.369yes
thermophileno99.865yes
glucose-fermentno92.4no

External links

@ref: 6359

culture collection no.: CCUG 56483, KCTC 12260, DSM 16313, KTCC 12260, CIP 110591

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Phylogeny18092456Acinetobacter marinus sp. nov. and Acinetobacter seohaensis sp. nov., isolated from sea water of the Yellow Sea in Korea.Yoon JH, Kim IG, Oh TKJ Microbiol Biotechnol2007Acinetobacter/classification/genetics/*isolation & purification, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Seawater/*microbiologyPhenotype
Genetics34472980Genome Sequence of Acinetobacter towneri Strain DSM 16313, Previously Known as the Proposed Type Strain of Acinetobacter seohaensis.Maehana S, Kitasato H, Suzuki MMicrobiol Resour Announc202110.1128/MRA.00690-21

Reference

@idauthorscataloguedoi/urltitle
6359Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16313)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16313
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33554Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30392
60983Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56483)https://www.ccug.se/strain?id=56483
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
115968Curators of the CIPCollection of Institut Pasteur (CIP 110591)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110591