Strain identifier

BacDive ID: 8135

Type strain: Yes

Species: Acinetobacter ursingii

Strain history: CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic, strain: NIPH 137 <- 1993, Clinical Laboratory, Prague, Czech Republic

NCBI tax ID(s): 981336 (strain), 108980 (species)

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General

@ref: 6155

BacDive-ID: 8135

DSM-Number: 16037

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Acinetobacter ursingii CCUG 45559 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from blood of female with endocarditis.

NCBI tax id

NCBI tax idMatching level
981336strain
108980species

strain history

@refhistory
6155<- LMG <- A. Nemec, Natl. Inst. Pub. Health, Prague <- E. Stranska
123758CIP <- 2001, A. Nemec, NIPH, Prague, Czech Republic, strain: NIPH 137 <- 1993, Clinical Laboratory, Prague, Czech Republic

doi: 10.13145/bacdive8135.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter ursingii
  • full scientific name: Acinetobacter ursingii Nemec et al. 2001

@ref: 6155

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter ursingii

full scientific name: Acinetobacter ursingii Nemec et al. 2001

type strain: yes

Morphology

cell morphology

  • @ref: 123758
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@reftype of hemolysis
6155gamma
123758

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6155COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6155NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
42137MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123758CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6155positivegrowth30mesophilic
6155positivegrowth28mesophilic
42137positivegrowth30mesophilic
56820positivegrowth30mesophilic
123758positivegrowth10-37
123758nogrowth41thermophilic
123758nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
56820aerobe
123758obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
123758NaClpositivegrowth0-4 %
123758NaClnogrowth6 %
123758NaClnogrowth8 %
123758NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12375816947citrate+carbon source
12375817632nitrate-reduction
12375816301nitrite-reduction
12375817234glucose-degradation
12375817632nitrate-respiration

antibiotic resistance

  • @ref: 123758
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12375815688acetoin-
12375817234glucose-

enzymes

@refvalueactivityec
6155catalase+1.11.1.6
6155cytochrome-c oxidase-1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123758oxidase-
123758beta-galactosidase+3.2.1.23
123758gelatinase-
123758catalase+1.11.1.6
123758gamma-glutamyltransferase-2.3.2.2
123758urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123758--+++++---++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6155---------------++++--
6155---------------++++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123758------------------------------------------------++---+--------++-----------+-+-+++------++++----+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
6155blood of female with endocarditisCzech RepublicCZEEurope
56820Human blood,female patient with endocarditisCzech RepublicCZEEurope1993Prague
123758Human, BloodCzech RepublicCZEEuropePrague1993

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Inflammation
#Infection#Patient
#Host Body Product#Fluids#Blood
#Host#Human#Female

taxonmaps

  • @ref: 69479
  • File name: preview.99_997.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_669;98_777;99_997&stattab=map
  • Last taxonomy: Acinetobacter septicus
  • 16S sequence: AJ275038
  • Sequence Identity:
  • Total samples: 76
  • aquatic counts: 7
  • animal counts: 59
  • plant counts: 10

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61552Risk group (German classification)
1237581Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter ursingii strain LMG 19575 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY601847715ena981336
20218Acinetobacter ursingii strain DSM16037 16S ribosomal RNA gene, partial sequenceEF611417452ena981336
6155Acinetobacter ursingii 16S rRNA gene, strain LUH 3792TypeAJ2750381439ena981336

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter ursingii DSM 16037 = CIP 107286GCA_000368825scaffoldncbi981336
66792Acinetobacter ursingii DSM 16037 = CIP 107286981336.4wgspatric981336
66792Acinetobacter ursingii DSM 16037 = CIP 107286981336.6wgspatric981336
66792Acinetobacter ursingii strain FDAARGOS_1095108980.91completepatric108980
66792Acinetobacter ursingii E. Stranska, DSM 160372547132306draftimg981336
66792Acinetobacter ursingii E. Stranska, DSM 160372565956639draftimg981336
66792Acinetobacter ursingii DSM 16037 = CIP 107286GCA_000248135contigncbi981336

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.727no
flagellatedno94.691no
gram-positiveno97.523no
anaerobicno97.807yes
aerobicyes90.884yes
halophileno88.94no
spore-formingno97.124no
glucose-utilno86.127yes
thermophileno99.856no
glucose-fermentno91.546yes

External links

@ref: 6155

culture collection no.: CCUG 45559, ATCC BAA 617, KCTC 12410, CCM 7024, CIP 107286, DSM 16037, CNCTC 6735, LMG 19575, NIPH 137, LUH 3792

straininfo link

  • @ref: 77541
  • straininfo: 13273

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11594623Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens.Nemec A, De Baere T, Tjernberg I, Vaneechoutte M, van der Reijden TJ, Dijkshoorn LInt J Syst Evol Microbiol10.1099/00207713-51-5-18912001Acinetobacter/*classification/*genetics/growth & development/isolation & purification, Acinetobacter Infections/*microbiology, DNA, Ribosomal/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNAPathogenicity
Enzymology25172868AmiE, a novel N-acylhomoserine lactone acylase belonging to the amidase family, from the activated-sludge isolate Acinetobacter sp. strain Ooi24.Ochiai S, Yasumoto S, Morohoshi T, Ikeda TAppl Environ Microbiol10.1128/AEM.02190-142014Acinetobacter/classification/*enzymology/genetics/isolation & purification, Acyl-Butyrolactones/*metabolism, Amidohydrolases/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Cloning, Molecular, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Phylogeny, Sewage/*microbiology, Transposases/genetics/metabolismPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6155Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16037)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16037
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42137Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4704
56820Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45559)https://www.ccug.se/strain?id=45559
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77541Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13273.1StrainInfo: A central database for resolving microbial strain identifiers
123758Curators of the CIPCollection of Institut Pasteur (CIP 107286)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107286