Strain identifier

BacDive ID: 8133

Type strain: Yes

Species: Acinetobacter tandoii

Strain Designation: 4N13

Strain history: CIP <- 2002, P. Kämpfer, Univ., Giessen, Germany: strain 4N13

NCBI tax ID(s): 1120927 (strain), 202954 (species)

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General

@ref: 5645

BacDive-ID: 8133

DSM-Number: 14970

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, oval-shaped

description: Acinetobacter tandoii 4N13 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Wastewater treatment plant.

NCBI tax id

NCBI tax idMatching level
1120927strain
202954species

strain history

@refhistory
5645<- P. Kämpfer, University Giessen, Germany; 4N13 <- G. Knight
421222002, P. Kämpfer, Univ., Giessen, Germany: strain 4N13
123427CIP <- 2002, P. Kämpfer, Univ., Giessen, Germany: strain 4N13

doi: 10.13145/bacdive8133.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter tandoii
  • full scientific name: Acinetobacter tandoii Carr et al. 2003

@ref: 5645

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter tandoii

full scientific name: Acinetobacter tandoii Carr et al. 2003

strain designation: 4N13

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
123427negativeoval-shapedno
125438negative98
125439negative91.1

colony morphology

  • @ref: 123427

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5645CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
5645TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42122MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123427CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
5645positivegrowth30
42122positivegrowth30
123427positivegrowth10-41
123427nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
123427obligate aerobe
125439obligate aerobe97.2

spore formation

@refspore formationconfidence
125438no93.331
125439no94

halophily

@refsaltgrowthtested relationconcentration
123427NaClpositivegrowth0-4 %
123427NaClnogrowth6 %
123427NaClnogrowth8 %
123427NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12342717632nitrate-reduction
12342716301nitrite-reduction
12342717632nitrate-respiration
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

antibiotic resistance

  • @ref: 123427
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12342735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12342715688acetoin-
12342717234glucose-

enzymes

@refvalueactivityec
5645catalase+1.11.1.6
5645cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
123427oxidase-
123427beta-galactosidase+3.2.1.23
123427gelatinase-
123427catalase+1.11.1.6
123427gamma-glutamyltransferase-2.3.2.2
123427urease-3.5.1.5
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123427--++-+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5645---------------+-+-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123427---------------------------------------------+--+++++-----+--+++---+++--++-++++++-------++++++-+++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5645Wastewater treatment plantVictoriaAustraliaAUSAustralia and Oceania
123427Environment, Bendigo waste water treatment plantVictoriaAustraliaAUSAustralia and Oceania1991

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Engineered#Waste#Water treatment plant

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
56451Risk group (German classification)
1234271Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter tandoii strain DSM14970 16S ribosomal RNA gene, partial sequenceEF611414452nuccore202954
20218Acinetobacter tandoii strain DSM 14970 16S ribosomal RNA gene, partial sequenceGU3883811375nuccore202954
20218Acinetobacter tandoii genomic DNA containing 16S-23S IGS, strain DSM 14970, direct sequence AllHE651866657nuccore202954
20218Acinetobacter tandoii 16S rRNA gene, strain DSM 14970HE6519291529nuccore202954
5645Acinetobacter tandoii 16S ribosomal RNA gene, partial sequenceAF5098301325nuccore202954
124043Acinetobacter tandoii strain DSM 14970 16S ribosomal RNA gene, partial sequence.OQ331051282nuccore202954

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter tandoii DSM 14970 = CIP 107469GCA_000400735scaffoldncbi1120927
66792Acinetobacter tandoii DSM 14970 = CIP 107469GCA_000621065scaffoldncbi1120927
66792Acinetobacter tandoii DSM 14970 = CIP 1074691120927.5wgspatric1120927
66792Acinetobacter tandoii DSM 14970 = CIP 1074691120927.3wgspatric1120927
66792Acinetobacter tandoii DSM 149702556921011draftimg1120927
66792Acinetobacter tandoii DSM 149702565956702draftimg1120927

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative91.1
125439BacteriaNetmotilityAbility to perform movementyes55.9
125439BacteriaNetspore_formationAbility to form endo- or exosporesno94
125438gram-positivegram-positivePositive reaction to Gram-stainingno98no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.387no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.674no
125438spore-formingspore-formingAbility to form endo- or exosporesno93.331no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.975yes
125438motile2+flagellatedAbility to perform flagellated movementno77.7no

External links

@ref: 5645

culture collection no.: DSM 14970, CIP 107469, CCM 7199

straininfo link

  • @ref: 77539
  • straininfo: 113571

literature

  • topic: Phylogeny
  • Pubmed-ID: 12892111
  • title: Seven novel species of Acinetobacter isolated from activated sludge.
  • authors: Carr EL, Kampfer P, Patel BKC, Gurtler V, Seviour RJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02486-0
  • year: 2003
  • mesh: Acinetobacter/*classification/genetics/*isolation & purification, Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, In Situ Hybridization, Fluorescence, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Terminology as Topic, Victoria
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5645Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14970)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14970
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42122Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4908
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
77539Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113571.1StrainInfo: A central database for resolving microbial strain identifiers
123427Curators of the CIPCollection of Institut Pasteur (CIP 107469)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107469
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1